View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_high_29 (Length: 250)

Name: NF2045_high_29
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_high_29
NF2045_high_29
[»] chr2 (26 HSPs)
chr2 (16-189)||(30798667-30798835)
chr2 (154-250)||(18685711-18685817)
chr2 (154-250)||(2085947-2086053)
chr2 (154-250)||(33366485-33366591)
chr2 (154-250)||(37308531-37308637)
chr2 (154-250)||(44284512-44284610)
chr2 (189-250)||(16104194-16104255)
chr2 (189-250)||(42706278-42706339)
chr2 (154-250)||(4641391-4641497)
chr2 (154-250)||(32497790-32497896)
chr2 (154-250)||(34338685-34338791)
chr2 (154-250)||(35114660-35114766)
chr2 (189-250)||(5278943-5279004)
chr2 (189-250)||(39461234-39461295)
chr2 (189-250)||(42365497-42365558)
chr2 (154-250)||(33889133-33889224)
chr2 (154-250)||(17540589-17540695)
chr2 (189-250)||(2645195-2645256)
chr2 (189-250)||(9733039-9733100)
chr2 (189-250)||(40692225-40692286)
chr2 (154-189)||(9717116-9717151)
chr2 (154-250)||(30326440-30326546)
chr2 (154-232)||(12939428-12939506)
chr2 (154-184)||(27462984-27463014)
chr2 (189-250)||(7258816-7258877)
chr2 (189-250)||(19513798-19513859)
[»] chr8 (29 HSPs)
chr8 (154-250)||(14005168-14005259)
chr8 (154-250)||(4052372-4052463)
chr8 (189-250)||(29672447-29672508)
chr8 (154-250)||(30543146-30543237)
chr8 (154-250)||(29563350-29563456)
chr8 (154-250)||(31513707-31513813)
chr8 (154-250)||(32020125-32020231)
chr8 (154-250)||(32303709-32303815)
chr8 (189-250)||(5968988-5969049)
chr8 (154-250)||(37664407-37664498)
chr8 (154-250)||(37861771-37861862)
chr8 (154-250)||(3251780-3251886)
chr8 (150-250)||(12753449-12753558)
chr8 (154-250)||(41709652-41709758)
chr8 (154-250)||(45446330-45446436)
chr8 (156-250)||(7591571-7591664)
chr8 (153-232)||(21272587-21272676)
chr8 (189-250)||(13407059-13407120)
chr8 (189-250)||(34101428-34101489)
chr8 (154-250)||(6386451-6386557)
chr8 (154-250)||(8673179-8673285)
chr8 (154-250)||(31731939-31732045)
chr8 (189-250)||(7394938-7394999)
chr8 (189-250)||(27103879-27103940)
chr8 (154-250)||(34063003-34063109)
chr8 (154-192)||(35225538-35225576)
chr8 (199-232)||(35225593-35225626)
chr8 (156-232)||(10466952-10467028)
chr8 (154-250)||(41548504-41548599)
[»] chr4 (28 HSPs)
chr4 (154-250)||(33552944-33553035)
chr4 (154-250)||(29616063-29616154)
chr4 (154-250)||(20802633-20802739)
chr4 (154-250)||(49152201-49152307)
chr4 (154-250)||(52319204-52319310)
chr4 (154-250)||(2725234-2725325)
chr4 (154-250)||(21579904-21580010)
chr4 (154-250)||(24002216-24002322)
chr4 (189-250)||(6776501-6776562)
chr4 (189-250)||(33177134-33177195)
chr4 (156-228)||(36497112-36497179)
chr4 (154-250)||(47361511-47361602)
chr4 (154-250)||(23521758-23521864)
chr4 (154-250)||(43640977-43641083)
chr4 (189-250)||(14296520-14296581)
chr4 (189-250)||(14314768-14314829)
chr4 (189-250)||(20518124-20518185)
chr4 (154-247)||(12600764-12600867)
chr4 (154-250)||(53343579-53343670)
chr4 (154-250)||(56154499-56154605)
chr4 (184-250)||(54542908-54542974)
chr4 (189-250)||(29785639-29785700)
chr4 (189-250)||(37865676-37865737)
chr4 (191-250)||(44649264-44649322)
chr4 (196-250)||(55065435-55065488)
chr4 (199-232)||(7001788-7001821)
chr4 (191-232)||(22318503-22318544)
chr4 (189-250)||(55593808-55593869)
[»] chr3 (22 HSPs)
chr3 (154-250)||(20609751-20609842)
chr3 (154-250)||(44116830-44116921)
chr3 (189-250)||(28675711-28675772)
chr3 (154-250)||(34026558-34026649)
chr3 (154-250)||(2134946-2135052)
chr3 (189-250)||(4851559-4851620)
chr3 (189-250)||(53046744-53046805)
chr3 (154-250)||(42636506-42636597)
chr3 (154-250)||(26282490-26282596)
chr3 (189-250)||(1344810-1344871)
chr3 (189-250)||(12349274-12349335)
chr3 (189-232)||(39052960-39053003)
chr3 (189-250)||(21221463-21221524)
chr3 (189-250)||(40094424-40094485)
chr3 (189-250)||(51259883-51259944)
chr3 (193-250)||(53557898-53557955)
chr3 (154-189)||(21373816-21373851)
chr3 (154-189)||(29584751-29584786)
chr3 (154-189)||(47958606-47958641)
chr3 (154-211)||(20254951-20255003)
chr3 (189-250)||(25860524-25860585)
chr3 (154-186)||(43175445-43175477)
[»] chr5 (23 HSPs)
chr5 (154-250)||(7523046-7523152)
chr5 (154-250)||(24181739-24181830)
chr5 (158-250)||(29241272-29241359)
chr5 (154-250)||(2351555-2351661)
chr5 (154-250)||(4818255-4818361)
chr5 (154-250)||(35701152-35701258)
chr5 (189-250)||(31770706-31770767)
chr5 (154-250)||(11963216-11963322)
chr5 (154-249)||(23091420-23091510)
chr5 (155-250)||(41459480-41459570)
chr5 (188-250)||(41790577-41790639)
chr5 (154-250)||(7208345-7208436)
chr5 (189-249)||(8136759-8136819)
chr5 (154-250)||(31880191-31880282)
chr5 (157-232)||(34794765-34794850)
chr5 (189-250)||(6284414-6284475)
chr5 (189-229)||(39918427-39918467)
chr5 (154-189)||(20119646-20119681)
chr5 (191-250)||(40182386-40182445)
chr5 (201-250)||(5571757-5571806)
chr5 (154-216)||(21739305-21739377)
chr5 (191-232)||(24036155-24036196)
chr5 (189-250)||(32528635-32528696)
[»] chr6 (21 HSPs)
chr6 (156-250)||(17867712-17867816)
chr6 (156-250)||(17877495-17877599)
chr6 (154-250)||(24203238-24203344)
chr6 (154-250)||(11212132-11212238)
chr6 (155-250)||(24242540-24242645)
chr6 (154-249)||(29814740-29814845)
chr6 (156-250)||(34176722-34176811)
chr6 (189-250)||(2614816-2614877)
chr6 (189-250)||(32132528-32132589)
chr6 (154-250)||(11613939-11614030)
chr6 (191-250)||(167071-167130)
chr6 (189-250)||(3932955-3933016)
chr6 (154-232)||(28502334-28502422)
chr6 (189-250)||(32410000-32410061)
chr6 (154-226)||(3259553-3259635)
chr6 (154-250)||(15277085-15277191)
chr6 (184-250)||(4494246-4494312)
chr6 (154-189)||(17443138-17443173)
chr6 (189-250)||(15277428-15277489)
chr6 (154-232)||(32805353-32805441)
chr6 (154-186)||(34684207-34684239)
[»] chr7 (27 HSPs)
chr7 (154-250)||(40753049-40753140)
chr7 (154-250)||(47442731-47442822)
chr7 (154-250)||(32873879-32873985)
chr7 (154-250)||(46633576-46633682)
chr7 (156-250)||(18386406-18386510)
chr7 (189-250)||(30849356-30849417)
chr7 (154-250)||(18470563-18470669)
chr7 (154-250)||(26994335-26994441)
chr7 (189-250)||(30599118-30599179)
chr7 (189-250)||(43158796-43158857)
chr7 (154-247)||(3922816-3922919)
chr7 (153-250)||(41211311-41211418)
chr7 (154-250)||(36769679-36769785)
chr7 (189-250)||(1870058-1870119)
chr7 (189-250)||(21784795-21784856)
chr7 (189-250)||(47947684-47947745)
chr7 (189-250)||(47953114-47953175)
chr7 (154-250)||(10932667-10932773)
chr7 (154-250)||(11321995-11322101)
chr7 (199-250)||(21133305-21133356)
chr7 (189-250)||(3892136-3892197)
chr7 (189-250)||(12982227-12982288)
chr7 (191-250)||(29661249-29661308)
chr7 (154-189)||(46408775-46408810)
chr7 (154-216)||(16962991-16963048)
chr7 (189-250)||(26371919-26371980)
chr7 (188-232)||(11822155-11822199)
[»] chr1 (27 HSPs)
chr1 (154-250)||(26118399-26118490)
chr1 (154-250)||(30105864-30105955)
chr1 (154-250)||(844908-845014)
chr1 (154-250)||(7183802-7183908)
chr1 (154-250)||(16386738-16386844)
chr1 (154-250)||(51264379-51264485)
chr1 (154-250)||(41972796-41972902)
chr1 (189-247)||(1351621-1351679)
chr1 (188-250)||(6711230-6711292)
chr1 (164-250)||(20495075-20495156)
chr1 (189-250)||(12890167-12890228)
chr1 (189-250)||(17887876-17887937)
chr1 (189-250)||(24339821-24339882)
chr1 (189-250)||(42510454-42510515)
chr1 (189-250)||(45491059-45491120)
chr1 (154-250)||(44738225-44738331)
chr1 (155-250)||(35387495-35387600)
chr1 (189-250)||(17327833-17327894)
chr1 (189-250)||(50540273-50540334)
chr1 (154-250)||(16451011-16451117)
chr1 (154-250)||(28340487-28340593)
chr1 (154-192)||(39281779-39281817)
chr1 (191-232)||(38087197-38087238)
chr1 (189-250)||(46154829-46154890)
chr1 (154-186)||(32270242-32270274)
chr1 (154-250)||(34663826-34663917)
chr1 (154-186)||(51703420-51703452)
[»] scaffold0360 (1 HSPs)
scaffold0360 (154-250)||(15492-15583)
[»] scaffold0208 (1 HSPs)
scaffold0208 (154-250)||(2453-2559)
[»] scaffold0098 (1 HSPs)
scaffold0098 (154-250)||(51314-51420)
[»] scaffold0729 (1 HSPs)
scaffold0729 (189-250)||(4694-4755)
[»] scaffold0054 (1 HSPs)
scaffold0054 (154-250)||(23452-23558)
[»] scaffold0004 (1 HSPs)
scaffold0004 (154-250)||(373079-373170)
[»] scaffold0169 (2 HSPs)
scaffold0169 (154-250)||(12651-12757)
scaffold0169 (154-250)||(18169-18275)
[»] scaffold0014 (1 HSPs)
scaffold0014 (154-250)||(101824-101930)
[»] scaffold0957 (1 HSPs)
scaffold0957 (189-250)||(2610-2671)
[»] scaffold0003 (1 HSPs)
scaffold0003 (154-186)||(338762-338794)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 30798835 - 30798667
Alignment:
Q  16 atgattgaagattataatttggtgaaatagacacagaagatatagacatatccattgttattgtaaactatttatgttgttgaaaaaatacaaaaatatt 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30798835 atgattgaagattataattaggtgaaatagacacagaagatatagacatatccattgttattgtaaactatttatattgttgaaaaaatacaaaaatatt 30798736  T
Q  116 tttgatattattctttc-aaatggagactttcattttacgtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    ||||||||||||||| | ||||||||      |||||| |||||||||||||||||||||||||| |||||||||    
T  30798735 tttgatattattcttccaaaatggag------attttatgtgtttggtttgcaaaacagcaagtactggacagaa 30798667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 18685711 - 18685817
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  18685711 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaagacagaacagcacaggacaaattttttatggcattg 18685810  T
Q  244 agtaatt 250  Q
    |||||||    
T  18685811 agtaatt 18685817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 2085947 - 2086053
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  2085947 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaaattttttatgccattg 2086046  T
Q  244 agtaatt 250  Q
    |||||||    
T  2086047 agtaatt 2086053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 33366485 - 33366591
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||    
T  33366485 gtgtttggtttgcaaaacagcaagtactggacagaacaatacaagatagaacagtacaacacaagtcagaacagcacaggacaaattttttatggcattg 33366584  T
Q  244 agtaatt 250  Q
    | |||||    
T  33366585 aataatt 33366591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 37308531 - 37308637
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||| |||||| |||||||||          ||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  37308531 gtgtttggtttgcaaaacaacaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaaattttttatggcattg 37308630  T
Q  244 agtaatt 250  Q
    |||||||    
T  37308631 agtaatt 37308637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 44284512 - 44284610
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaaca--gtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| ||||||||| || |||   || |||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  44284512 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 44284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 16104194 - 16104255
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||||| ||||||||  ||| ||||||||||||    
T  16104194 atagaacagtacaacacaaggcagaacaacacagggcaaattttttatggcattgagtaatt 16104255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 42706278 - 42706339
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||||||||||| |||||||||||||||  ||| ||||||||||||    
T  42706278 atagaacaatacaacacaagacagaacagcacaggacaaattttttatggcattgagtaatt 42706339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 4641391 - 4641497
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||| |||||||||||||||||| |||||||||          ||||||||||||||| ||| |||||||||||||||||||||||  ||  |||||    
T  4641391 gtgtttgctttgcaaaacagcaagtactggacagaacagtaaaatatagaacagtacaacataaggcagaacaacacaggacaaattttttataccattg 4641490  T
Q  244 agtaatt 250  Q
    |||||||    
T  4641491 agtaatt 4641497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 32497790 - 32497896
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||| ||| ||||||| |||||||||||||||  ||| |||||    
T  32497790 gtgtttggtttgcaaaacagtaagtactggacagaacaatacaagatagaacagtacaacaaaaggcagaacagcacaggacaaattttttatggcattg 32497889  T
Q  244 agtaatt 250  Q
    |||||||    
T  32497890 agtaatt 32497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 34338685 - 34338791
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||| |||||| |||||||||          ||||||||||||||||||| ||||||| ||||||||||| |||  ||| |||||    
T  34338685 gtgtttggtttgcaaaacaacaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaaatttttatggcattg 34338784  T
Q  244 agtaatt 250  Q
    |||||||    
T  34338785 agtaatt 34338791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 35114660 - 35114766
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||  |||||||||||||||  ||| || ||    
T  35114660 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacggcacaggacaaattttttatggcaatg 35114759  T
Q  244 agtaatt 250  Q
    |||||||    
T  35114760 agtaatt 35114766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 5279004 - 5278943
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  5279004 atagaacaatacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 5278943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 39461234 - 39461295
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  39461234 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 39461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 42365497 - 42365558
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||| || |||||||  ||| ||||||||||||    
T  42365497 atagaacagtacaacacaaggcagaacaacacaagataaattttttatggcattgagtaatt 42365558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 33889133 - 33889224
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||     |||||||||||||||||| ||||||| ||||  |||||||||  |||  |||||||||||    
T  33889133 gtgtttggtttgcaaaacagtaagtactggac-----agaacagtacaacacaaggcagaacagcacataacaaattttttatggtattgagtaatt 33889224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 17540589 - 17540695
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||| ||||          ||||||||||||||||||| ||||||| |||| |||| |||||  ||| |||||    
T  17540589 gtgtttggtttgcaaaacagcaagtactggatagaacagtataagatagaacagtacaacacaaggcagaacagcacatgacatattttttatggcattg 17540688  T
Q  244 agtaatt 250  Q
    |||||||    
T  17540689 agtaatt 17540695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 2645256 - 2645195
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| ||| ||||||| ||| |||||||||||  ||| ||||||||||||    
T  2645256 atagaacagtacaacataaggcagaacagcactggacaaattttttatggcattgagtaatt 2645195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 9733100 - 9733039
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||  |||||||||||||||  ||| |||||| |||||    
T  9733100 atagaacagtacaacacaaggcagaacggcacaggacaaattttttatggcattgaataatt 9733039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 40692225 - 40692286
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| || |||| |||||||||||||||  ||| |||||| |||||    
T  40692225 atagaacagtacaacacaaggcaaaacagcacaggacaaattttttatggcattgaataatt 40692286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 9717116 - 9717151
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    |||||||||||||||||||||||||| |||||||||    
T  9717116 gtgtttggtttgcaaaacagcaagtactggacagaa 9717151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 30326546 - 30326440
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||| |||||||| |||||||||          |||||| |||||||||||| ||||||| ||||||||||| |||  |||  ||||    
T  30326546 gtgtttggtttgcaaaagagcaagtactggacagaacagtacaagatagaaccgtacaacacaaggcagaacagcacaggacaaaatttttatggaattg 30326447  T
Q  244 agtaatt 250  Q
    |||||||    
T  30326446 agtaatt 30326440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 12939506 - 12939428
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||| || |||||  | |||  | ||||||| |||||||||| |||||||||||| || |||||||    
T  12939506 gtgtttggtttgcaaaatagtaagtaccgtacaagacagaacagcacaacacaaggcagaacaacacaagataaatttt 12939428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 27463014 - 27462984
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattgga 184  Q
    |||||||||||||||||||||||||||||||    
T  27463014 gtgtttggtttgcaaaacagcaagtattgga 27462984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 7258816 - 7258877
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |  ||| ||||||||||  ||| ||||||||||||    
T  7258816 atagaacagtacaacacaaggcagaatagtacatgacaaattttttatggcattgagtaatt 7258877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 19513859 - 19513798
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||| | ||||||||||| ||| |||||||||||  |||  |||||||||||    
T  19513859 atagaacagtacaatagaagacagaacagcacgggacaaattttttatggtattgagtaatt 19513798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 14005259 - 14005168
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  14005259 gtgtttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaagacagaacaacataggacaaattttttatgacattgagtaatt 14005168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 4052372 - 4052463
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  4052372 gtgtttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 4052463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 29672508 - 29672447
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  29672508 atagaacagtgcaacacaagacagaacaacacaggacaaatttttcatggcattgagtaatt 29672447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 30543237 - 30543146
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||| || |||||||||||||||     |||||||||||||| |||||||||||||||||||| ||  ||| ||||||||||||    
T  30543237 gtgtttggtttgcaaaatagtaagtattggacagaa-----cagtacaacacaaggcagaacaacacaggacaaatattttatggcattgagtaatt 30543146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 29563456 - 29563350
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||||||||| ||||||          |||||||||||||||||||  ||||||||||| ||||||||||  ||| |||||    
T  29563456 gtgtttggtttgcaaaacagcaagtattgaacagaacagtacaagatagaacagtacaacacaaggtagaacaacacatgacaaattttttatggcattg 29563357  T
Q  244 agtaatt 250  Q
    |||||||    
T  29563356 agtaatt 29563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 31513813 - 31513707
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| |||||||||||| ||          ||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  31513813 gtgtttggtttgcaaaacagtaagtattggacaaaacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaaattttttatggcattg 31513714  T
Q  244 agtaatt 250  Q
    |||||||    
T  31513713 agtaatt 31513707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 32020231 - 32020125
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||| ||||||||||  ||| |||||    
T  32020231 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattg 32020132  T
Q  244 agtaatt 250  Q
    |||||||    
T  32020131 agtaatt 32020125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 32303815 - 32303709
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||| ||| ||||||| |||||||||||||||  ||| |||||    
T  32303815 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacaaaaggcagaacagcacaggacaaattttttatggcattg 32303716  T
Q  244 agtaatt 250  Q
    |||||||    
T  32303715 agtaatt 32303709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 5969049 - 5968988
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||| ||||||||||||  ||| ||||||||||||    
T  5969049 atagaacagtacaacacaaggcagaacaacataggacaaattttttatggcattgagtaatt 5968988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 37664498 - 37664407
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||| | |||||||||     |||||||||||||  ||||||| |||| ||||||||||  ||| ||||||||||||    
T  37664498 gtgtttggtttgcaaaacagcaagcactggacagaa-----cagtacaacacaatgcagaacagcacaagacaaattttttatggcattgagtaatt 37664407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 37861771 - 37861862
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||| |||||||||||| ||||| |||||||||     |||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  37861771 gtgtttgatttgcaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 37861862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 3251886 - 3251780
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| |||||| ||||||||          ||||||||||||||||||| ||||||| || ||||||||||||  ||| |||||    
T  3251886 gtgtttggtttgcaaaacagtaagtatcggacagaacaatataagatagaacagtacaacacaaggcagaacagcataggacaaattttttatggcattg 3251787  T
Q  244 agtaatt 250  Q
    |||||||    
T  3251786 agtaatt 3251780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 12753558 - 12753449
Alignment:
Q  150 ttacgtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgac 239  Q
    |||||||||||||||||||||||| |||||||||||||||          ||||||| |||||||||||||||||||||||| ||||||  ||  ||| |    
T  12753558 ttacgtgtttggtttgcaaaacag-aagtattggacagaacagtacaagatagaacaatacaacacaagacagaacaacacatgacaaaaattttatggc 12753460  T
Q  240 attgagtaatt 250  Q
    |||||||||||    
T  12753459 attgagtaatt 12753449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 41709652 - 41709758
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||| ||||  ||| |||||    
T  41709652 gtgtttggtttgcaaaacagtaagtactggacagaacaatacaagatagaacagtacaacacaaggcagaacagcacaggacaatttttttatggcattg 41709751  T
Q  244 agtaatt 250  Q
    |||||||    
T  41709752 agtaatt 41709758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 45446330 - 45446436
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| ||||||| |||| ||||||||||  ||| |||||    
T  45446330 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattg 45446429  T
Q  244 agtaatt 250  Q
    |||||||    
T  45446430 agtaatt 45446436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 7591664 - 7591571
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||  | |||  | |||||||||||| |||||  |||||| |||||||||||||||  |||||||||| |||||    
T  7591664 gtttggtttgcaaaacagcaagtacagtacaagaaagaacagtacaatacaagggagaacagcacaggacaaatttt-tatgacattgaataatt 7591571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 21272587 - 21272676
Alignment:
Q  153 cgtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||||||||||||||||||||||          ||||| |||||||||||||| ||||||| || ||||||||||||    
T  21272587 cgtgtttggtttgcaaaacagcaagtattggacagaacaatacaagatagatcagtacaacacaaggcagaacagcataggacaaatttt 21272676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 13407120 - 13407059
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||| ||||||||||  ||  ||||||||||||    
T  13407120 atagaacagtacaacacaaggcagaacaacacatgacaaattttttatagcattgagtaatt 13407059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 34101428 - 34101489
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| | ||||||||||    
T  34101428 atagaacagtacaacacaaggcagaacatcacaggacaaattttttatggcgttgagtaatt 34101489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 6386451 - 6386557
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||| |||||| |||||||||          ||||||||||||||||||| ||||||| ||||  |||||||||  ||| |||||    
T  6386451 gtgtttggtttgcaaaacaacaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaaaacaaattttttatggcattg 6386550  T
Q  244 agtaatt 250  Q
    |||||||    
T  6386551 agtaatt 6386557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 8673285 - 8673179
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||| ||          ||||||||||||||||||| || |||| ||||||||||| |||  ||| |||||    
T  8673285 gtgtttggtttgcaaaacagcaagtactggacaaaacagtacaagatagaacagtacaacacaaggcaaaacagcacaggacaaaatttttatggcattg 8673186  T
Q  244 agtaatt 250  Q
    |||||||    
T  8673185 agtaatt 8673179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 31731939 - 31732045
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||||||||| | |||| |||||| |||  ||| |||||    
T  31731939 gtgtttggtttgcaaaacagtaagtactggacagaaaagtataagatagaacagtacaacacaagacagaatagcacatgacaaaatttttatggcattg 31732038  T
Q  244 agtaatt 250  Q
    |||||||    
T  31732039 agtaatt 31732045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 7394999 - 7394938
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||||| || ||||||| ||||  ||| || |||||||||    
T  7394999 atagaacagtacaacacaagacagaacagcataggacaagttttttatggcactgagtaatt 7394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 27103879 - 27103940
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  27103879 atagaacattacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 27103940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 34063003 - 34063109
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||| ||||||| |||||||||          ||||||||||||||| ||| ||| |||||||| ||||||||||  ||| |||||    
T  34063003 gtgtttggtttgcaaaaccgcaagtactggacagaacagtacaagatagaacagtacaacataaggcagcacaacacatgacaaattttttatggcattg 34063102  T
Q  244 agtaatt 250  Q
    | |||||    
T  34063103 aataatt 34063109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 35225538 - 35225576
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatag 192  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  35225538 gtgtttggtttgcaaaacagtaagtactggacagaatag 35225576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 35225593 - 35225626
Alignment:
Q  199 acaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||||||||| ||||||||||    
T  35225593 acaacacaagacagaacaacacaagacaaatttt 35225626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10466952 - 10467028
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||||||||||    |||| | ||||||  |||| |||||  |||||| |||||||||||||||    
T  10466952 gtttggtttgcaaaacagcaagtacaatacaggaaagaacaacacaatacaagggagaacagcacaggacaaatttt 10467028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 41548504 - 41548599
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||| |||||||||||||  | |||  | ||||||  |||| |||||  |||||| |||||||||||||||  |||||||||| |||||    
T  41548504 gtgtttggtttgtaaaacagcaagtacagtacaagaaagaacaacacaatacaagggagaacatcacaggacaaatttt-tatgacattgaataatt 41548599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 33553035 - 33552944
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     |||||||||||||| || ||||||||||||||||||||  ||| ||||||||||||    
T  33553035 gtgtttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaaggcaaaacaacacaggacaaattttttatggcattgagtaatt 33552944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 29616063 - 29616154
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||| |||||||| | |||     ||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||    
T  29616063 gtgtttggtttgcaaaatagcaagtacttgac-----agaacagtacaacacaagacagaacaacacatgacaaattttttatggcattgagtaatt 29616154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 20802739 - 20802633
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| || ||||||          ||||||||||||||||||| |||||||||||||||||||||||  ||| |||||    
T  20802739 gtgtttggtttgcaaaacagcaagtactgaacagaacagtacaagatagaacagtacaacacaaggcagaacaacacaggacaaattttttatggcattg 20802640  T
Q  244 agtaatt 250  Q
    |||||||    
T  20802639 agtaatt 20802633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 49152307 - 49152201
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||    
T  49152307 gtgtttggtttgcaaaacagcaagtactggacagaacagtataagatagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattg 49152208  T
Q  244 agtaatt 250  Q
    |||||||    
T  49152207 agtaatt 49152201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 52319204 - 52319310
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||| ||          ||||||||||||||||||| |||||||||||||||||||||||  ||| |||||    
T  52319204 gtgtttggtttgcaaaacagcaagtactggacataacagtacaagatagaacagtacaacacaaggcagaacaacacaggacaaattttttatggcattg 52319303  T
Q  244 agtaatt 250  Q
    |||||||    
T  52319304 agtaatt 52319310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 2725325 - 2725234
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     || || | |||||| ||||||| |||||||||||||||  ||||||||||||||||    
T  2725325 gtgtttggtttgcaaaacagcaagtactggacagaa-----caatatagcacaaggcagaacagcacaggacaaattttttatgacattgagtaatt 2725234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 21579904 - 21580010
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| |||||||||||||||||||||||  |||  ||||    
T  21579904 gtgtttggtttgcaaaacagtaagtactggacagaacagtataagatagaacagtacaacacaaggcagaacaacacaggacaaattttttatggtattg 21580003  T
Q  244 agtaatt 250  Q
    |||||||    
T  21580004 agtaatt 21580010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 24002216 - 24002322
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||||||||   || |||||    
T  24002216 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaattttttttggcattg 24002315  T
Q  244 agtaatt 250  Q
    |||||||    
T  24002316 agtaatt 24002322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 6776501 - 6776562
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  6776501 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 6776562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 33177195 - 33177134
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||  ||| ||||||||||||    
T  33177195 atagaacagtacaacacaagacagaacaacaaaggacaaatattttatggcattgagtaatt 33177134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 36497112 - 36497179
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaa 228  Q
    |||||||||||||||||||||||| |||||| ||     |||||||||||||| |||||||||||||||||||    
T  36497112 gtttggtttgcaaaacagcaagtactggacataa-----cagtacaacacaaggcagaacaacacaggacaaa 36497179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 47361602 - 47361511
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||| |||||||  |||||||||||||||     |||||||||||||| ||||||| |||| ||||||||||  |||| |||||||||||    
T  47361602 gtgtttggtttacaaaacaataagtattggacagaa-----cagtacaacacaaggcagaacagcacatgacaaattttttatgatattgagtaatt 47361511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 23521758 - 23521864
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatag----------aacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| ||||||||| ||          |||||||||||||||| ||||||| |||| ||||||||||  ||| |||||    
T  23521758 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagataaaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattg 23521857  T
Q  244 agtaatt 250  Q
    |||||||    
T  23521858 agtaatt 23521864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 43640977 - 43641083
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| | |||||||          ||||||||||||||||||| ||||||| ||||||||||| |||  ||| |||||    
T  43640977 gtgtttggtttgcaaaacagcaagtactagacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaaatttttatggcattg 43641076  T
Q  244 agtaatt 250  Q
    |||||||    
T  43641077 agtaatt 43641083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 14296520 - 14296581
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||||||    
T  14296520 atagaacagtacaacacaaagcagaacagcacaggacaaattttttatggcattgagtaatt 14296581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 14314768 - 14314829
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||||||    
T  14314768 atagaacagtacaacacaaagcagaacagcacaggacaaattttttatggcattgagtaatt 14314829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 20518185 - 20518124
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  20518185 atagaatagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 20518124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 12600764 - 12600867
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| ||||||||          |||||||||||||||||||| ||||||| |||  ||||||||||  ||| |||||    
T  12600764 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaagtcagaacagcacttgacaaattttttatggcattg 12600863  T
Q  244 agta 247  Q
    ||||    
T  12600864 agta 12600867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 53343670 - 53343579
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||| |||||||||||| ||||||||| ||||||     |||||||||||||  |||||||||||| ||||||||||  ||| |||||| |||||    
T  53343670 gtgttttgtttgcaaaacaacaagtattgaacagaa-----cagtacaacacaatgcagaacaacacatgacaaattttttatggcattgaataatt 53343579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 56154499 - 56154605
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||| |||||| |||||||||          ||||||||||||||||||| |||||||  ||| ||||||||||  ||| |||||    
T  56154499 gtgtttggtttgcaaaacaacaagtactggacagaacagtataagatagaacagtacaacacaaggcagaacagtacatgacaaattttttatggcattg 56154598  T
Q  244 agtaatt 250  Q
    |||||||    
T  56154599 agtaatt 56154605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 54542908 - 54542974
Alignment:
Q  184 acagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||| |||||||||||||||||||  ||||||| |||| ||||||||||  ||| ||||||||||||    
T  54542908 acaggatagaacagtacaacacaaagcagaacagcacaagacaaattttttatgtcattgagtaatt 54542974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 29785700 - 29785639
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  ||| |||||| |||||    
T  29785700 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgaataatt 29785639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 37865676 - 37865737
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||  ||| |||||| |||||    
T  37865676 atagaacagtacaacacaaggcagaacaacacatgacaatttttttatggcattgaataatt 37865737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 44649322 - 44649264
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||| |||||  ||||||||||| ||||||||||| |||||||||| |||||    
T  44649322 agaacagtacaatacaagggagaacaacacatgacaaattttg-atgacattgaataatt 44649264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 55065488 - 55065435
Alignment:
Q  196 agtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  55065488 agtacaacacaaggcagaacagcacaggacaaatttt-tatggcattgagtaatt 55065435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 7001788 - 7001821
Alignment:
Q  199 acaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||||| ||||||||||||||    
T  7001788 acaacacaagacagaacaatacaggacaaatttt 7001821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 22318544 - 22318503
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||    
T  22318544 agaacagcacaacacaagacataacaacacatgacaaatttt 22318503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 55593808 - 55593869
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||||  ||  |||||||||  ||| ||||||||||||    
T  55593808 atagaacagtacaacacaaggcagaacaatgcaaaacaaattttttatggcattgagtaatt 55593869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 20609842 - 20609751
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  ||||||||||||||||    
T  20609842 gtgtttggtttgcaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatgacattgagtaatt 20609751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 44116830 - 44116921
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| ||||     ||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  44116830 gtgtttggtttgcaaaacagcaagtactgga-----tagaacagtacaacacaagtcagaacagcacaggacaaattttttatggcattgagtaatt 44116921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 28675711 - 28675772
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||    
T  28675711 atagaacagtacaacacaaggcagaacaacacaggacaaattttttatggcattgagtaatt 28675772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 34026558 - 34026649
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  |||  |||||||||||    
T  34026558 gtgtttggtttgcaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatggtattgagtaatt 34026649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 2134946 - 2135052
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| | |||||||          ||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  2134946 gtgtttggtttgcaaaacagcaagtactagacagaacgttacaagatagaacagtacaacacaaggcagaacaacacaagacaaattttttatggcattg 2135045  T
Q  244 agtaatt 250  Q
    |||||||    
T  2135046 agtaatt 2135052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 4851620 - 4851559
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||| ||||||||||||||  ||| ||||||||||||    
T  4851620 atagaacagtacaacacaaggcagaacaagacaggacaaattttttatggcattgagtaatt 4851559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 53046805 - 53046744
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||    
T  53046805 atagaacagtacaacacaaggcagaacaacacagaacaaattttttatggcattgagtaatt 53046744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 42636597 - 42636506
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||| |||||| | ||||||||||     ||||||||||| ||||||| |||||||||||||||  ||| |||| |||||||    
T  42636597 gtgtttggtttgcaaaacaacaagtactagacagaatag-----tacaacacaaggcagaacagcacaggacaaattttttatggcattaagtaatt 42636506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 26282596 - 26282490
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||| ||||          ||||||||||||||||||||||||||| |||| ||||||||||  ||| |||||    
T  26282596 gtgtttggtttgcaaaacagcaagtactggatagaacagtacaagatagaacagtacaacacaagacagaacagcacatgacaaattttttatggcattg 26282497  T
Q  244 agtaatt 250  Q
    | |||||    
T  26282496 aataatt 26282490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 1344871 - 1344810
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||  ||| ||||||||||||    
T  1344871 atagaacagtacaacacaagacagaacatcacatgacaatttttttatggcattgagtaatt 1344810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 12349335 - 12349274
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  12349335 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 12349274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 39053003 - 39052960
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  39053003 atagaacagtacaacacaagatagaacaacacatgacaaatttt 39052960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 21221524 - 21221463
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| ||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  21221524 atagaacagtacaacataaggcagaacagcacaagacaaattttttatggcattgagtaatt 21221463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 40094424 - 40094485
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||| |||||||||||| |||||| |||  ||| ||||||||||||    
T  40094424 atagaacaatacaacacaaggcagaacaacacatgacaaaatttttatggcattgagtaatt 40094485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 51259944 - 51259883
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| |||||| |||  ||| ||||||||||||    
T  51259944 atagaacagtacaacacaaggcagaacagcacaagacaaaatttttatggcattgagtaatt 51259883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 53557955 - 53557898
Alignment:
Q  193 aacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  53557955 aacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 53557898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 21373816 - 21373851
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    |||||||||||||||||||| |||||||||||||||    
T  21373816 gtgtttggtttgcaaaacagtaagtattggacagaa 21373851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 29584751 - 29584786
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    |||||||||||||||||||||||||| |||||||||    
T  29584751 gtgtttggtttgcaaaacagcaagtactggacagaa 29584786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 47958641 - 47958606
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    |||||||||||||||||||||||||| |||||||||    
T  47958641 gtgtttggtttgcaaaacagcaagtactggacagaa 47958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 20254951 - 20255003
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagaca 211  Q
    |||||||||||||||||||||||||| |||||     | |||||||||||||||||||    
T  20254951 gtgtttggtttgcaaaacagcaagtactggac-----ataacagtacaacacaagaca 20255003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 25860585 - 25860524
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||| |||||| ||| || ||||||||||||||||||||  ||| || |||||||||    
T  25860585 atagaacagcacaacaaaaggcataacaacacaggacaaattttttatggcaatgagtaatt 25860524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 43175445 - 43175477
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggaca 186  Q
    |||||||||||||||||||||||||| ||||||    
T  43175445 gtgtttggtttgcaaaacagcaagtactggaca 43175477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 7523046 - 7523152
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| |||||||||||||||          ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||    
T  7523046 gtgtttggtttgcaaaacaggaagtattggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaattttttatgacattg 7523145  T
Q  244 agtaatt 250  Q
    |||||||    
T  7523146 agtaatt 7523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 24181830 - 24181739
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  24181830 gtgtttggtttgcaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 24181739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 29241272 - 29241359
Alignment:
Q  158 ttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  29241272 ttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 29241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 2351555 - 2351661
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||||||||||| |||||||  ||| |||||    
T  2351555 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacaggataaattttttatggcattg 2351654  T
Q  244 agtaatt 250  Q
    |||||||    
T  2351655 agtaatt 2351661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 4818361 - 4818255
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||| ||||||||| |||||||||||| ||||||||||  ||| |||||    
T  4818361 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtgcaacacaaggcagaacaacacaagacaaattttttatggcattg 4818262  T
Q  244 agtaatt 250  Q
    |||||||    
T  4818261 agtaatt 4818255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 35701152 - 35701258
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||| |||||||||||||||||  ||| || ||    
T  35701152 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaataacacaggacaaattttttatggcaatg 35701251  T
Q  244 agtaatt 250  Q
    |||||||    
T  35701252 agtaatt 35701258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 31770767 - 31770706
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  31770767 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 31770706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 11963216 - 11963322
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||  ||||| |||||| ||||||||||  ||| |||||    
T  11963216 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaagcagaataacacatgacaaattttttatggcattg 11963315  T
Q  244 agtaatt 250  Q
    |||||||    
T  11963316 agtaatt 11963322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 23091510 - 23091420
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaat 249  Q
    |||||||||||||||||||| ||||| |     ||| ||||||||||||||||||| ||||||||||| |||||||||   ||| |||||||||||    
T  23091510 gtgtttggtttgcaaaacagtaagtaat-----gaacagaacagtacaacacaagatagaacaacacaagacaaatttcttatggcattgagtaat 23091420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 41459480 - 41459570
Alignment:
Q  155 tgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||||     ||| ||||||||||||||||||  |||||| |||||||||||  ||  ||| ||||||||||||    
T  41459480 tgtttggtttgcaaaacagcaagtatt-----gaacagaacagtacaacacaaggtagaacagcacaggacaaaaatttaatggcattgagtaatt 41459570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 41790639 - 41790577
Alignment:
Q  188 aatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||  ||| ||||||||||||    
T  41790639 aatagaacagtacaacacaaggcagaacaacacatgacaaatattttatggcattgagtaatt 41790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 7208436 - 7208345
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||| |||||| |||||     |||||||||||| ||||||| ||||| ||| |||||||| ||  ||| ||||||||||||    
T  7208436 gtgtttggtttgcaaaacaacaagtactggac-----agaacagtacaatacaagacggaacagcacgggacaaatattttatggcattgagtaatt 7208345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 8136759 - 8136819
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaat 249  Q
    |||||||||||||||||||| || ||||||||||||||| ||||  ||| |||||||||||    
T  8136759 atagaacagtacaacacaaggcataacaacacaggacaatttttttatggcattgagtaat 8136819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 31880282 - 31880191
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||| |||||||||||| ||||| |||||||||     |||||||||||||| |||||||  ||| ||||||||||  |||||||||| |||||    
T  31880282 gtgtttgatttgcaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagtacatgacaaattttttatgacattgaataatt 31880191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 34794765 - 34794850
Alignment:
Q  157 tttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||||||||||||| |||||||||||||||          ||||||||||||||||||| |||||||||||| || |||||||    
T  34794765 tttggtttgcaaaacagtaagtattggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacatgataaatttt 34794850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 6284475 - 6284414
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||  ||| ||||||||||||    
T  6284475 atagaacagtacaacacaaggcagtacagcacaagacaaattttttatggcattgagtaatt 6284414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 39918427 - 39918467
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaat 229  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  39918427 atagaacagtacaacacaaggtagaacaacacaggacaaat 39918467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 20119646 - 20119681
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    |||||||||||||||||||| |||||||||||||||    
T  20119646 gtgtttggtttgcaaaacagtaagtattggacagaa 20119681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 40182386 - 40182445
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||| || |||| |||| ||||||||||  ||| ||||||||||||    
T  40182386 agaacagtacaacacaaggcaaaacagcacatgacaaattttttatggcattgagtaatt 40182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 5571806 - 5571757
Alignment:
Q  201 aacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  5571806 aacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 5571757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 21739377 - 21739305
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaaca 216  Q
    |||||||||||||||||||||||||| |||||| |          ||||||||||||||||||||||||||||    
T  21739377 gtgtttggtttgcaaaacagcaagtactggacataacaatataagatagaacagtacaacacaagacagaaca 21739305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 24036155 - 24036196
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    ||||||| |||||| |||||||||||||||| ||||||||||    
T  24036155 agaacagcacaacataagacagaacaacacatgacaaatttt 24036196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 32528635 - 32528696
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| ||| ||||||| |||| ||||||||||  ||| |||||| |||||    
T  32528635 atagaacagtacaacataaggcagaacagcacatgacaaattttttatggcattgaataatt 32528696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 17867712 - 17867816
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgag 245  Q
    |||||||||||||||||||||||| |||||||||          ||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  17867712 gtttggtttgcaaaacagcaagtactggacagaacagtacaacatagaacagtacaacacaaggcagaacaacacaggacaaattttttatggcattgag 17867811  T
Q  246 taatt 250  Q
    |||||    
T  17867812 taatt 17867816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 17877495 - 17877599
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgag 245  Q
    |||||||||||||||||||||||| |||||||||          ||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  17877495 gtttggtttgcaaaacagcaagtactggacagaacagtacaacatagaacagtacaacacaaggcagaacaacacaggacaaattttttatggcattgag 17877594  T
Q  246 taatt 250  Q
    |||||    
T  17877595 taatt 17877599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 24203238 - 24203344
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||| || |||| |||||||||||||||  ||| |||||    
T  24203238 gtgtttggtttgcaaaacagcaagtattggacagaacagtacatgatagaacagtacaacacaaggcaaaacagcacaggacaaattttttatggcattg 24203337  T
Q  244 agtaatt 250  Q
    |||||||    
T  24203338 agtaatt 24203344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 11212132 - 11212238
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||| |||||||||||| ||  ||| | |||    
T  11212132 gtgtttggtttgcaaaacagcaagtattggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaatgttttatggccttg 11212231  T
Q  244 agtaatt 250  Q
    |||||||    
T  11212232 agtaatt 11212238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 24242540 - 24242645
Alignment:
Q  155 tgtttggtttgcaaaacagcaagtattggacagaatagaaca----------gtacaacacaagacagaacaacacaggacaaattttgcatgacattga 244  Q
    ||||||||||||||||||||||||| ||||||||| || |||          |||||||||||| ||||||| |||||||||||||||  ||||||||||    
T  24242540 tgtttggtttgcaaaacagcaagtactggacagaacagtacaagataaaagagtacaacacaaggcagaacagcacaggacaaattttttatgacattga 24242639  T
Q  245 gtaatt 250  Q
    ||||||    
T  24242640 gtaatt 24242645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 29814740 - 29814845
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| |||||||||||||||||| ||||  ||| |||||    
T  29814740 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacaggacaatttttttatggcattg 29814839  T
Q  244 agtaat 249  Q
    ||||||    
T  29814840 agtaat 29814845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 34176722 - 34176811
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| | ||||| |||||||||     |||||||||| ||||||||||| |||||||||||||||  ||| ||||||||||||    
T  34176722 gtttggtttgcaaaacggtaagtactggacagaa-----cagtacaacataagacagaacagcacaggacaaattttttatggcattgagtaatt 34176811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 2614816 - 2614877
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||    
T  2614816 atagaacagtacaacacaaggcagaacaacacatgacaaattttttatggcattgagtaatt 2614877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 32132589 - 32132528
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  32132589 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 32132528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 11614030 - 11613939
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||||||||||     |||||||||||  | |  |||| |||||||||||||||||||  ||| ||||||||||||    
T  11614030 gtgtttggtttgcaaaacagcaagtattggac-----agaacagtacacgatagaacagtacaacacaggacaaattttttatggcattgagtaatt 11613939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 167130 - 167071
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||| ||||||| |||| ||||||||||  ||||||||||||||||    
T  167130 agaacagtacaacacaaggcagaacagcacatgacaaattttttatgacattgagtaatt 167071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 3933016 - 3932955
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||| |||| |||||||||||||||  ||| |||||| |||||    
T  3933016 atagaacagtacaacacaagacaaaacagcacaggacaaattttttatggcattgaataatt 3932955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 28502334 - 28502422
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| |||||||||||||||||| ||||    
T  28502334 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacaggacaattttt 28502422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 32410061 - 32410000
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  |||||||||| |||||    
T  32410061 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatgacattgaataatt 32410000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 3259553 - 3259635
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggaca 226  Q
    |||||||||||||||||||||||| ||||||||||          |||||||||||||||||||| |||||||||||| ||||    
T  3259553 gtgtttggtttgcaaaacagcaaggattggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacatgaca 3259635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 15277191 - 15277085
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| ||||||||          |||||||||||||||| ||| |||||||||||| ||||||  ||  ||| |||||    
T  15277191 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacataaggcagaacaacacatgacaaaaattttatggcattg 15277092  T
Q  244 agtaatt 250  Q
    |||||||    
T  15277091 agtaatt 15277085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 4494312 - 4494246
Alignment:
Q  184 acagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||| ||||||||| |||||| ||| |||||||||||||||||||||||  ||| || |||||||||    
T  4494312 acaggatagaacagcacaacataaggcagaacaacacaggacaaattttttatggcaatgagtaatt 4494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 17443138 - 17443173
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17443138 gtgtttggtttgcaaaacagcaaatattggacagaa 17443173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 15277489 - 15277428
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||  | |||||||||| |||||||||  ||  ||||||||||||    
T  15277489 atagaacagtacaacacaaggtaaaacaacacagaacaaattttttatagcattgagtaatt 15277428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 32805353 - 32805441
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacaga----------atagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    |||||||||||||||||||||||||| |||||| |          |||||||| ||||||||||| ||||||| |||| ||||||||||    
T  32805353 gtgtttggtttgcaaaacagcaagtactggacataacagtacaagatagaacaatacaacacaaggcagaacagcacatgacaaatttt 32805441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 34684239 - 34684207
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggaca 186  Q
    |||||||||||||||||||| ||||||||||||    
T  34684239 gtgtttggtttgcaaaacagtaagtattggaca 34684207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 40753049 - 40753140
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||||||     |||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||    
T  40753049 gtgtttggtttgcaaaacagtaagtactggacagaa-----cagtacaacacaaagcagaacaacacaggacaaattttttatggcattgagtaatt 40753140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 47442731 - 47442822
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||||||||||| ||     |||||||||| ||| |||||||  ||||||||||||||  ||||||||||||||||    
T  47442731 gtgtttggtttgcaaaacagcaagtattggacaaaa-----cagtacaacataaggcagaacactacaggacaaattttttatgacattgagtaatt 47442822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 32873985 - 32873879
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  32873985 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaaattttttatggcattg 32873886  T
Q  244 agtaatt 250  Q
    |||||||    
T  32873885 agtaatt 32873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 46633576 - 46633682
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatag----------aacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||||||||||||| |||||          |||||||||||||||| |||||||||||| ||||||||||  ||| |||||    
T  46633576 gtgtttggtttgcaaaacagcaagtattggacataatagtacaagatagaacagtacaacacaaggcagaacaacacaagacaaattttttatggcattg 46633675  T
Q  244 agtaatt 250  Q
    |||||||    
T  46633676 agtaatt 46633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 18386406 - 18386510
Alignment:
Q  156 gtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgag 245  Q
    ||||||||||||||||||||||||||||||| ||          ||||||| ||||||||||| |||||||||||| ||||||||||  |||||||||||    
T  18386406 gtttggtttgcaaaacagcaagtattggacaaaacggtacaaaatagaacaatacaacacaaggcagaacaacacatgacaaattttttatgacattgag 18386505  T
Q  246 taatt 250  Q
    |||||    
T  18386506 taatt 18386510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 30849417 - 30849356
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||||||    
T  30849417 atagaacagtacaacacaagacagaacaacacaggacaatttttttatggcattgagtaatt 30849356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 18470563 - 18470669
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||| ||||||||||  ||| |||||    
T  18470563 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattg 18470662  T
Q  244 agtaatt 250  Q
    |||||||    
T  18470663 agtaatt 18470669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 26994441 - 26994335
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||    
T  26994441 gtgtttggtttgcaaaacagaaagtactggacagaacaggacaagatagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattg 26994342  T
Q  244 agtaatt 250  Q
    |||||||    
T  26994341 agtaatt 26994335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 30599179 - 30599118
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| |||||||||||| ||||||||||  |||| |||||||||||    
T  30599179 atagaacagtacaacacaaggcagaacaacacatgacaaattttttatgaaattgagtaatt 30599118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 43158857 - 43158796
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||||||||||  ||||||||||||||  ||| ||||||||||||    
T  43158857 atagaacagtacaacacaagacagaacagtacaggacaaattttttatggcattgagtaatt 43158796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 3922919 - 3922816
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          |||| |||||||||||||| ||||||| |||||||||||||||  ||| |||||    
T  3922919 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaccagtacaacacaaggcagaacagcacaggacaaattttttatggcattg 3922820  T
Q  244 agta 247  Q
    ||||    
T  3922819 agta 3922816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 41211418 - 41211311
Alignment:
Q  153 cgtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacatt 242  Q
    ||||||||||||||||||||||||||| |||||| ||          ||||||| ||||||||||| |||||||||| ||||||||||||  ||| ||||    
T  41211418 cgtgtttggtttgcaaaacagcaagtactggacaaaacagtacaagatagaacaatacaacacaaggcagaacaacataggacaaattttttatggcatt 41211319  T
Q  243 gagtaatt 250  Q
    ||||||||    
T  41211318 gagtaatt 41211311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 36769785 - 36769679
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||||| ||||||| |||| ||||||||||  ||| |||||    
T  36769785 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattg 36769686  T
Q  244 agtaatt 250  Q
    |||||||    
T  36769685 agtaatt 36769679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 1870058 - 1870119
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| || |||||||  ||||||||||||||||    
T  1870058 atagaacagtacaacacaaggcagaacagcacatgataaattttttatgacattgagtaatt 1870119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 21784795 - 21784856
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||  ||| ||||||||||||    
T  21784795 atagaacagtacaacacaaggcagaacaacacagaacaaatcttttatggcattgagtaatt 21784856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 47947684 - 47947745
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  47947684 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 47947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 47953114 - 47953175
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  47953114 atagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagtaatt 47953175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 10932773 - 10932667
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||||||||||||||| | ||||||| || ||||||||||||  ||| |||||    
T  10932773 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacacggcagaacagcataggacaaattttttatggcattg 10932674  T
Q  244 agtaatt 250  Q
    |||||||    
T  10932673 agtaatt 10932667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 11322101 - 11321995
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| |||||| ||||||||          ||||||||||||||||||| |||||||  ||| ||||||||||  ||| |||||    
T  11322101 gtgtttggtttgcaaaacagtaagtatcggacagaacagtacaagatagaacagtacaacacaaggcagaacagtacatgacaaattttttatggcattg 11322002  T
Q  244 agtaatt 250  Q
    |||||||    
T  11322001 agtaatt 11321995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 21133305 - 21133356
Alignment:
Q  199 acaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||| ||||||||||||| |||||||||  ||||||||||||||||    
T  21133305 acaacacaaggcagaacaacacagtacaaattttttatgacattgagtaatt 21133356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 3892197 - 3892136
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| || | ||||||||||  ||| ||||||||||||    
T  3892197 atagaacagtacaacacaaggcagaacagcatatgacaaattttttatggcattgagtaatt 3892136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 12982227 - 12982288
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||| |||||| |||  ||| ||||||||||||    
T  12982227 atagaacagtacaacacaaggcagaacagcacatgacaaaatttttatggcattgagtaatt 12982288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 29661249 - 29661308
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||| ||||||||||||| |||||||||||| ||||||||||  ||  ||||||||||||    
T  29661249 agaatagtacaacacaaggcagaacaacacaagacaaattttttatagcattgagtaatt 29661308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 46408775 - 46408810
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa 189  Q
    ||||||||||||||||||||||||||||||| ||||    
T  46408775 gtgtttggtttgcaaaacagcaagtattggatagaa 46408810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 16962991 - 16963048
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaaca 216  Q
    |||||||||||||||||||| ||||| |||||     |||||||||||||||||| |||||||    
T  16962991 gtgtttggtttgcaaaacagtaagtactggac-----agaacagtacaacacaaggcagaaca 16963048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 26371980 - 26371919
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||| || |||||||| |||| ||||||||||  ||| |||||| |||||    
T  26371980 atagaacagtacaacataaaacagaacatcacatgacaaattttttatggcattgaataatt 26371919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 11822155 - 11822199
Alignment:
Q  188 aatagaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    |||||||||  |||||||||| |||||||||| ||||||||||||    
T  11822155 aatagaacaacacaacacaaggcagaacaacataggacaaatttt 11822199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 26118490 - 26118399
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     |||||||||||||| ||||||| |||||||||||||||  ||| |||||| |||||    
T  26118490 gtgtttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggacaaattttttatggcattgaataatt 26118399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 30105955 - 30105864
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||| |||||||||     |||||||||||||| ||||||||||| |||||||||||  ||| |||| |||||||    
T  30105955 gtgtttggtttgcaaaacagcaagtactggacagaa-----cagtacaacacaaggcagaacaacactggacaaattttttatggcattaagtaatt 30105864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 845014 - 844908
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||    
T  845014 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattg 844915  T
Q  244 agtaatt 250  Q
    |||||||    
T  844914 agtaatt 844908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 7183802 - 7183908
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          |||||||||||||||||||||||||||| ||||||||||||||  ||| |||||    
T  7183802 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaagacagaacaatacaggacaaattttttatggcattg 7183901  T
Q  244 agtaatt 250  Q
    |||||||    
T  7183902 agtaatt 7183908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 16386738 - 16386844
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||| ||||| ||||||| |||||||||||||||  ||| |||||    
T  16386738 gtgtttggtttgcaaaacagcaagtattggacagaacagtacaagatagaacagtacaatacaaggcagaacagcacaggacaaattttttatggcattg 16386837  T
Q  244 agtaatt 250  Q
    |||||||    
T  16386838 agtaatt 16386844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 51264379 - 51264485
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||| | |||||||||||||||  ||| |||||    
T  51264379 gtgtttggtttgcaaatcagcaagtattggacagaacagtacaagatagaacagtacaacacaagacagaatagcacaggacaaattttttatggcattg 51264478  T
Q  244 agtaatt 250  Q
    |||||||    
T  51264479 agtaatt 51264485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 41972796 - 41972902
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||     
T  41972796 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcatta 41972895  T
Q  244 agtaatt 250  Q
    |||||||    
T  41972896 agtaatt 41972902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 1351679 - 1351621
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagta 247  Q
    |||||||||||||||||||| |||||||||||| ||||||||||  ||| |||||||||    
T  1351679 atagaacagtacaacacaaggcagaacaacacatgacaaattttttatggcattgagta 1351621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 6711292 - 6711230
Alignment:
Q  188 aatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||  ||| ||||||||||||    
T  6711292 aatagaacagtacaacacaaggcagaacagcacaagacaaattttttatggcattgagtaatt 6711230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 20495156 - 20495075
Alignment:
Q  164 tgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||| ||||||||||     ||||||||||||||| ||| ||||||| |||| ||||||||||  ||||||||||||||||    
T  20495156 tgcaaaacagaaagtattgga-----tagaacagtacaacataaggcagaacagcacatgacaaattttttatgacattgagtaatt 20495075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 12890167 - 12890228
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||  ||| ||||||||||||    
T  12890167 atagaacagtacaacacaaggcagaacagcacaggataaattttttatggcattgagtaatt 12890228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 17887876 - 17887937
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||    
T  17887876 atagaacaatacaacacaaggcagaacaacacatgacaaattttttatggcattgagtaatt 17887937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 24339882 - 24339821
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||| |||||    
T  24339882 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgaataatt 24339821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 42510454 - 42510515
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| |||||| |||||    
T  42510454 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgaataatt 42510515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 45491120 - 45491059
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| ||||||||||| ||||||| |||| ||||||||||| ||| ||||||||||||    
T  45491120 atagaacaatacaacacaaggcagaacagcacatgacaaattttgtatggcattgagtaatt 45491059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 44738331 - 44738225
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| | |||||||          ||||||| |||||||||||  ||||||||||| ||||||||||  ||| |||||    
T  44738331 gtgtttggtttgcaaaacagcaagtactagacagaacagtagaagatagaacaatacaacacaaggtagaacaacacatgacaaattttttatggcattg 44738232  T
Q  244 agtaatt 250  Q
    |||||||    
T  44738231 agtaatt 44738225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 35387600 - 35387495
Alignment:
Q  155 tgtttggtttgcaaaacagcaagtattggacagaata----------gaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattga 244  Q
    ||||||||||||||||||||||||| |||||| ||||          |||||||||||||||||  |||||| |||| ||||||||||  ||| ||||||    
T  35387600 tgtttggtttgcaaaacagcaagtactggacataataatacaagatagaacagtacaacacaaggtagaacagcacatgacaaattttttatggcattga 35387501  T
Q  245 gtaatt 250  Q
    ||||||    
T  35387500 gtaatt 35387495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 17327894 - 17327833
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||  ||| | ||||||||||    
T  17327894 atagaacagtacaatacaaggcagaacaacataggacaaattttttatggcgttgagtaatt 17327833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 50540273 - 50540334
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||| | ||||||| |||||| ||||||||  ||| ||||||||||||    
T  50540273 atagaacagtacaacacacgtcagaacagcacagggcaaattttttatggcattgagtaatt 50540334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 16451011 - 16451117
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||| ||||| |||||||||          ||||| ||||||||||| | ||||| | |||||||||||||||  ||| |||||    
T  16451011 gtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaatagtacaacacatggcagaatagcacaggacaaattttttatggcattg 16451110  T
Q  244 agtaatt 250  Q
    |||||||    
T  16451111 agtaatt 16451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 28340593 - 28340487
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||| |||||||| |||||||||||||||          ||||||||||||||||||| |||||||  ||| ||||| ||||  ||| |||||    
T  28340593 gtgtttggtttacaaaacagtaagtattggacagaacagtacaagatagaacagtacaacacaaggcagaacagtacatgacaatttttttatggcattg 28340494  T
Q  244 agtaatt 250  Q
    |||||||    
T  28340493 agtaatt 28340487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 39281779 - 39281817
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatag 192  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  39281779 gtgtttggtttgcaaaacagtaagtactggacagaatag 39281817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 38087238 - 38087197
Alignment:
Q  191 agaacagtacaacacaagacagaacaacacaggacaaatttt 232  Q
    |||||||||||||| ||| ||||||| |||||||||||||||    
T  38087238 agaacagtacaacataaggcagaacagcacaggacaaatttt 38087197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 46154829 - 46154890
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    ||||||||||| ||||||||||| |||  |||| ||||||||||  |||||||||| |||||    
T  46154829 atagaacagtataacacaagacataacggcacatgacaaattttttatgacattgaataatt 46154890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 32270242 - 32270274
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggaca 186  Q
    |||||||||||||||||||||||||| ||||||    
T  32270242 gtgtttggtttgcaaaacagcaagtactggaca 32270274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 34663826 - 34663917
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||| |||||     |||||||||||||| |||  |||| | |||| ||||||||||  ||| |||| |||||||    
T  34663826 gtgtttggtttgcaaaacagtaagtactggac-----agaacagtacaacataaggtagaagagcacatgacaaattttttatggcattaagtaatt 34663917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 51703452 - 51703420
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggaca 186  Q
    |||||||||||||||||||||||||| ||||||    
T  51703452 gtgtttggtttgcaaaacagcaagtactggaca 51703420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 15583 - 15492
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||| ||||||| ||||| |||||||||     |||||||||||||| ||||||| ||||||| |||||||  ||||||||||||||||    
T  15583 gtgtttggtttgtaaaacagtaagtactggacagaa-----cagtacaacacaaggcagaacagcacaggataaattttttatgacattgagtaatt 15492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 2559 - 2453
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          ||||| ||||||||||||| ||||||| |||| ||||||||||  |||||||||    
T  2559 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaatagtacaacacaaggcagaacagcacatgacaaattttttatgacattg 2460  T
Q  244 agtaatt 250  Q
    |||||||    
T  2459 agtaatt 2453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 51314 - 51420
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||||||||          |||||||||| || ||||||||||||| |||| ||||||||||  |||||||||    
T  51314 gtgtttggtttgcaaaacagcaagtactggacagaacagtacaatatagaacagtataatacaagacagaacagcacaagacaaattttttatgacattg 51413  T
Q  244 agtaatt 250  Q
    |||||||    
T  51414 agtaatt 51420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 4755 - 4694
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  4755 atagaacagtacaacacaaggcagaacagcacaggacaaattttttatggcattgagtaatt 4694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 23452 - 23558
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||| || |||||||||          ||||||| ||||||||||| ||||||| ||| |||||||||||  ||| |||||    
T  23452 gtgtttggtttgcaaaacagcaaatactggacagaacagtacaagatagaacaatacaacacaaggcagaacagcactggacaaattttttatggcattg 23551  T
Q  244 agtaatt 250  Q
    |||||||    
T  23552 agtaatt 23558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 373170 - 373079
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaatagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||||||||||||||||||||     || ||| |||||||||||||| ||| |||||||| | || | |||||||  ||| ||||||||||||    
T  373170 gtgtttggtttgcaaaacagcaagt-----actgaacagaacagtacaacataaggcagaacaatatagaataaattttttatggcattgagtaatt 373079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 12757 - 12651
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||| ||||          ||||||||||||||||| | ||||||| |||| ||||||||||  ||  |||||    
T  12757 gtgtttggtttgcaaaacagcaagtactggatagaacagtacaagatagaacagtacaacacatgtcagaacagcacaagacaaattttttatagcattg 12658  T
Q  244 agtaatt 250  Q
    |||||||    
T  12657 agtaatt 12651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 18275 - 18169
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    |||||||||||||||||||||||||| |||| ||||          ||||||||||||||||| | ||||||| |||| ||||||||||  ||  |||||    
T  18275 gtgtttggtttgcaaaacagcaagtactggatagaacagtacaagatagaacagtacaacacatgtcagaacagcacaagacaaattttttatagcattg 18176  T
Q  244 agtaatt 250  Q
    |||||||    
T  18175 agtaatt 18169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 101824 - 101930
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggacagaa----------tagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattg 243  Q
    ||||||||||||||||||||||||||  ||||||||          ||||||||||||| | |||  |||||| |||||||||||||||  ||| |||||    
T  101824 gtgtttggtttgcaaaacagcaagtaccggacagaacagtataagatagaacagtacaatataaggtagaacagcacaggacaaattttttatggcattg 101923  T
Q  244 agtaatt 250  Q
    |||||||    
T  101924 agtaatt 101930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 2671 - 2610
Alignment:
Q  189 atagaacagtacaacacaagacagaacaacacaggacaaattttgcatgacattgagtaatt 250  Q
    |||||||| |||||||||||  ||||||||||| ||||||||||  |||| |||| ||||||    
T  2671 atagaacaatacaacacaaggtagaacaacacatgacaaattttttatgagattgggtaatt 2610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 338762 - 338794
Alignment:
Q  154 gtgtttggtttgcaaaacagcaagtattggaca 186  Q
    |||||||||||||||||||||||||| ||||||    
T  338762 gtgtttggtttgcaaaacagcaagtactggaca 338794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University