View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2045_high_7 (Length: 526)
Name: NF2045_high_7
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 206 - 444
Target Start/End: Complemental strand, 7903056 - 7902820
Alignment:
| Q |
206 |
tttggtaaccaagtctgatcaaagtttttgaaatgataagtacaaagtggacaccagtatcaacataagtaaagtcatgcaaatcagaactcaagacata |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7903056 |
tttggtaaccaagtctgatcaaagtttc-gaaatgacaagtacaaagtgcacgccagtattaacataagtaaagtcatgcaaatcagaactca-gacata |
7902959 |
T |
|
| Q |
306 |
tgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902958 |
tgaccattatcctgtactcaaataatagaaaactttggtatttctgtgggagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttc |
7902859 |
T |
|
| Q |
406 |
cataaagcttcatttgtttgcacctcctgagggctgcta |
444 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
7902858 |
cataaagcttcatttggttgcacctcctgagggcagcta |
7902820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 320 - 471
Target Start/End: Complemental strand, 7913366 - 7913210
Alignment:
| Q |
320 |
tactcaaataatagaaaactttggtatttctgtgg-----gagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
414 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913366 |
tactcaaataatagaaaacttgggtatttttgtaggagcagagcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagct |
7913267 |
T |
|
| Q |
415 |
tcatttgtttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
471 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913266 |
tcatttggttgcacctcctgagggctgctagagcatcagactccctagtaaagaaaa |
7913210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 7904057 - 7903860
Alignment:
| Q |
17 |
actttgaactttccaactcaccctcttccgagaacaacagcggtaaaatgcagacaagagatttcaatttctcacattatctaaatgacaaaaaacatag |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7904057 |
actttgaactttccaactccccctcttccgaaaacaatagcggtaaaatgcagacaagagatttcaatttctcacattatctaaatggcaaaaaacatag |
7903958 |
T |
|
| Q |
117 |
cagattttacaaaac---nnnnnnnnntggtgaaggaaaaatgtcttcgatgaagatcattatttgggcgtagcattggtattaggggtgagtttggt |
211 |
Q |
| |
|
||||||||||||||| || ||| |||||||| |||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
7903957 |
cagattttacaaaacaaaaaaaaaaaatgttgagggaaaaatatcttcgttgaagatcattagttgggcgtagcattggtgttacgggtgagtttggt |
7903860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 7913498 - 7913384
Alignment:
| Q |
210 |
gtaaccaagtctgatcaaagtttttgaaatgataagtacaaagtggacaccagtatcaacataagtaaagtcatgcaaatcagaactcaagacatatgac |
309 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7913498 |
gtaaccaagtctgatcaaagtttc-gaaatgacaagtacaaagtgcacaccagtattaacataagtaaagtcatgcaaatcagaactc-ggacatatgat |
7913401 |
T |
|
| Q |
310 |
cattatcctgtactcaa |
326 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
7913400 |
cattatcctgtattcaa |
7913384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 468
Target Start/End: Complemental strand, 7896435 - 7896323
Alignment:
| Q |
356 |
agcaggggtaaccaaagttgttccaacaagctcaatttgcaatgtctttccataaagcttcatttgtttgcacctcctgagggctgctagagcatcagac |
455 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |||| || |||| ||| |||||| |
|
|
| T |
7896435 |
agcaggagtaaccaaacttgttccaacaagctcaatttgcaatgtctttccatcaagcttcatattgttgtacctcttgagagcggctaaagcctcagac |
7896336 |
T |
|
| Q |
456 |
tccctagtaaaga |
468 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
7896335 |
tgccttgtaaaga |
7896323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 7913013 - 7912959
Alignment:
| Q |
157 |
tcttcgatgaagatcattatttgggcgtagcattggtattaggggtgagtttggt |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
7913013 |
tcttcgatgaagatcattatatgggcgtagcattggtgttaggggtgagtttggt |
7912959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 7896271 - 7896218
Alignment:
| Q |
23 |
aactttccaactcaccctcttccgagaacaacagcggtaaaatgcagacaagag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
7896271 |
aactttccaactcaccctcttccgagaacaacagctgtaaaatacagaaaagag |
7896218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 7913157 - 7913073
Alignment:
| Q |
27 |
ttccaactcaccctcttccgagaacaacagcggtaaaatgcagacaagagatttcaatttctcacattatctaaatgacaaaaaa |
111 |
Q |
| |
|
|||||||||| | | || ||| ||||||||| |||||| | ||||||||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
7913157 |
ttccaactcatcatttttcgaaaacaacagctgtaaaaggaagacaagagatttcagtttctcatattatctgaatgacaaaaaa |
7913073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University