View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2045_high_9 (Length: 433)
Name: NF2045_high_9
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 30798357 - 30797944
Alignment:
| Q |
1 |
gatttcaacactgttaaactactatgttattatgaataaccaaacaattgaacttaagtggttaatgagttgatcaaaagacgaattgttaagtagaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30798357 |
gatttcaacactgttaaactactatgttattatgaatgaccaaacaattgaacttaagtggttaatgagttgatcaaaagacgaattgttcagtagaatc |
30798258 |
T |
|
| Q |
101 |
tgtgttcaatttttgaatggaacaattcttaaccaaactttatttactaaggcccttttccctagaagccggagacataaagaatgagaggaaactgaga |
200 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30798257 |
tgtgtttaatttttggatggaacaattctcaaccaaactttatttactaaggcccttttccctagaagccggagacataaagaatgagaggaaactgaga |
30798158 |
T |
|
| Q |
201 |
cattgcaaactagagggagaaacatttatgaaaactagagggagtgccggttagtaaaccagaagttagaatgaaaactaaaattgctgatgagagaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30798157 |
cattgcaaactagagggagaaacatttatgaaaactagagggagtgccggttaggaaaccagaagttagaatgaaaactaaaattgctgatgagagaaac |
30798058 |
T |
|
| Q |
301 |
aatgtgtccatgcattggtcattcgttactgtcacttctaatctgctttcttctgtaaaataccactcaagcaattaagcaggttggttcctcccagata |
400 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30798057 |
aatgtgtccatgcattggtcatgcgtaactgtcacttctaatttgctttcttatgtaaaataccactcaagcaattaagcaggttggttcctcctagata |
30797958 |
T |
|
| Q |
401 |
ctcttggatacatt |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30797957 |
ctcttggatacatt |
30797944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 24863063 - 24863032
Alignment:
| Q |
37 |
taaccaaacaattgaacttaagtggttaatga |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24863063 |
taaccaaacaattgaacttaagtggttaatga |
24863032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 30510710 - 30510678
Alignment:
| Q |
39 |
accaaacaattgaacttaagtggttaatgagtt |
71 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
30510710 |
accaaacaattgaactcaagtggttaatgagtt |
30510678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 3195307 - 3195339
Alignment:
| Q |
37 |
taaccaaacaattgaacttaagtggttaatgag |
69 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
3195307 |
taaccaaccaattgaacttaagtggttaatgag |
3195339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 6114389 - 6114441
Alignment:
| Q |
95 |
agaatctgtgttcaatttttgaatggaacaattcttaaccaaactttatttac |
147 |
Q |
| |
|
||||||| |||| ||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
6114389 |
agaatctatgttagatttttgaatgtaataattcttgaccaaactttatttac |
6114441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University