View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_10 (Length: 429)
Name: NF2045_low_10
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_10 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 178 - 429
Target Start/End: Complemental strand, 31264282 - 31264026
Alignment:
| Q |
178 |
tttgctaacttttttcactaaggaagaatttattaattattatatgaattgtataacgaagggattgcatgatattagtggtattgaattggtagctgta |
277 |
Q |
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| T |
31264282 |
tttgttaacttttttcactaaggaagaatttattaattattatatgaattgtataacgaagggattgcatgatattagtggtattgaattggtagctgta |
31264183 |
T |
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| Q |
278 |
gttgagcagcctctcggtttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaacgcgcaaatcatgcaca |
377 |
Q |
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| T |
31264182 |
gttgagcagcctcttggtttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaacgcgcaaatgatgcaca |
31264083 |
T |
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| Q |
378 |
gtagaagtggaaattca-----tcaaatcaagtatgtaacaaatgcttagccatatt |
429 |
Q |
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| T |
31264082 |
gtagaagtggaaattcatcagttcaaatcaagtatgtaacaaatgcttagccatatt |
31264026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 379
Target Start/End: Original strand, 31247654 - 31247985
Alignment:
| Q |
48 |
atccaactaatttaggtgaaggatggtcacctcatattgggtttggttttcaaagtaaacagtgtgggcgctttccagttattcccatacatcttgaaaa |
147 |
Q |
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| T |
31247654 |
atccgactaatttaggtgcaggatggtcaccttatattggatttggttttaaaagtaaacattgtggacgctttcccattattcccatacatcttggaaa |
31247753 |
T |
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| Q |
148 |
agatctggtgacagttgagttagatcaccttttgctaacttttttcactaaggaagaatttattaattattatatgaattgtataacgaagggattgcat |
247 |
Q |
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| T |
31247754 |
agatctggtcacagttgatttagatcacttgttgctaattcttttcactagggaagaatttattaattattatatgaattatataacaaagggattgcat |
31247853 |
T |
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| Q |
248 |
gatattagtggtattgaattggtagctgtagttgagcagcctctcggtttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatc |
347 |
Q |
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| T |
31247854 |
gatattagtggtattgaattgacagctgtagttgagcagccccttggtttgcatttggaggtaaaaaattgtggttatcattggatatttaaggaggatc |
31247953 |
T |
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| Q |
348 |
tggaacatttaaacgcgcaaatcatgcacagt |
379 |
Q |
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| T |
31247954 |
tggaacatttaaacccacaaatgatgtacagt |
31247985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 31213189 - 31213289
Alignment:
| Q |
8 |
ataggtgttgcttgctgcttaacatttgtagcacatgatgatccaactaatttaggtgaaggatggtcacctcatattgggtttggttttcaaagtaaac |
107 |
Q |
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| T |
31213189 |
ataggcgttgcttgctacttaacttttgtagcacatgatgatccaactaatttaggtgaacaaaggtcacctcatattgggttggttttccaaagtaaac |
31213288 |
T |
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| Q |
108 |
a |
108 |
Q |
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| T |
31213289 |
a |
31213289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 31247574 - 31247633
Alignment:
| Q |
7 |
gataggtgttgcttgctgcttaacatttgtagcacatgatgatccaactaatttaggtga |
66 |
Q |
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| T |
31247574 |
gataggcgttgcttgctgcttaacttttgtagcacgtgatggtccaactaatttaagtga |
31247633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 31213478 - 31213543
Alignment:
| Q |
296 |
ttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaac |
361 |
Q |
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| T |
31213478 |
ttgcatttagaggtcaaaaattgaggttatcgatggatatttaaggaggatttggagcaattaaac |
31213543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 31304676 - 31304721
Alignment:
| Q |
25 |
cttaacatttgtagcacatgatgatccaactaatttaggtgaagga |
70 |
Q |
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| T |
31304676 |
cttaacatttgtagcacatgatgatccaaatagtttaggtgaagga |
31304721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 13615354 - 13615413
Alignment:
| Q |
11 |
ggtgttgcttgctgcttaacatttgtagcacatgatgatccaactaatttaggtgaagga |
70 |
Q |
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| T |
13615354 |
ggtgtggcttgttgcttaacatttgtagcacatgatgatccaaatagtttaggtgaagga |
13615413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 13615482 - 13615557
Alignment:
| Q |
127 |
tattcccatacatcttgaaaaagatctggtgacagttgagttagatcaccttttgctaacttttttcactaaggaa |
202 |
Q |
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| T |
13615482 |
tattcccgtacatgttgaaaaagatctgattacagttgatttagatcacctgttgctacgttttatcagtaaggaa |
13615557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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