View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2045_low_12 (Length: 393)
Name: NF2045_low_12
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_12 |
 | |
|
| [»] scaffold0133 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 16784790 - 16784856
Alignment:
| Q |
288 |
agggtcttgagctggggggttccagaattgcttccatgctgatttgatattcactgcacccattgtt |
354 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
16784790 |
agggtattgagatgggcggtgccagaattgcttccatgctgatttgatattctctgcacacattgtt |
16784856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 17066854 - 17066894
Alignment:
| Q |
111 |
tctactaaacagagaactcattcctttaataagaagggatg |
151 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
17066854 |
tctactaaacagagcaggcattcctttaataagaagggatg |
17066894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 5723 - 5782
Alignment:
| Q |
12 |
aagaatatataggacacatcttcaatagatagttgatatttcagattcctaaccaaataat |
72 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
5723 |
aagaatatataggacacatcttcattagatagttgaaattt-atattcctaaccaaataat |
5782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 7056117 - 7056081
Alignment:
| Q |
114 |
actaaacagagaactcattcctttaataagaagggat |
150 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |
|
|
| T |
7056117 |
actaaacagagaagtctttcctttaataagaagggat |
7056081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University