View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_14 (Length: 369)
Name: NF2045_low_14
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 28430731 - 28430380
Alignment:
| Q |
1 |
tgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430731 |
tgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagagga |
28430632 |
T |
|
| Q |
101 |
gaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430631 |
gaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgcc |
28430532 |
T |
|
| Q |
201 |
atcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430531 |
atcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcac |
28430432 |
T |
|
| Q |
301 |
ccaacacctaccttgtctccaactttgaatttttgtaccttgtctcccacct |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430431 |
ccaacacctaccttgtctccaactttgaatttttgtaccttgtctcccacct |
28430380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 13373149 - 13373469
Alignment:
| Q |
9 |
tccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagct |
108 |
Q |
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||||||||||||||||||||| | || || ||| || | ||||||||||||||||||||||||||| || |||||||| || || || |||||||| |
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| T |
13373149 |
tccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggctatatactgtgatccccgcacaaagaagaggagca |
13373248 |
T |
|
| Q |
109 |
gcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagat |
208 |
Q |
| |
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|| |||||||| |||| | || ||||| | |||||| ||| ||||| || ||||| || || |||||||||||||||||||| || ||||||| || |
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| T |
13373249 |
gcggcatcaagtggtaaggcatcaggaatacggatcacgaagtgttcgtgggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatat |
13373348 |
T |
|
| Q |
209 |
tcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacc |
308 |
Q |
| |
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|||||| || |||||||| |||| |||| || ||||| |||||| || ||| |||| ||||||||||||||| |||||||||||| ||||| |
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| T |
13373349 |
tcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacc |
13373448 |
T |
|
| Q |
309 |
taccttgtctccaactttgaa |
329 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
13373449 |
taccttgtctccaactttgaa |
13373469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 13378945 - 13379264
Alignment:
| Q |
9 |
tccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagaggagaggagct |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| |||| |||||||| ||||| ||||||||||| |||||||| || || ||||||||||| |
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| T |
13378945 |
tccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaaaatgtttcattgggctatacactgtgatcccagcacaaaggagaggagcg |
13379044 |
T |
|
| Q |
109 |
gcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagat |
208 |
Q |
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||||||||||| | || | || ||||| | || | |||| ||||||| ||||| ||||| |||||||||||||||||||| |||||||||| || |
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| T |
13379045 |
gcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcctccatatgtgatagtgccatcaacat |
13379144 |
T |
|
| Q |
209 |
tcttggaaccgtatgtgagaatcacttttggacagtaattttcgagactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacc |
308 |
Q |
| |
|
||||||||| |||||| |||||| |||| || |||||||||||| ||| ||| |||| ||||| ||||||||| |||||||||||| ||||| |
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| T |
13379145 |
tcttggaactgtatgtctgaatcatctttgagcaataattttcgagatcctcgccacaactttgacatgaatggcaggatccaaccatgcaccccacacc |
13379244 |
T |
|
| Q |
309 |
taccttgtctccaactttga |
328 |
Q |
| |
|
||| | ||||||||||||| |
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|
| T |
13379245 |
aaccctatctccaactttga |
13379264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 13419471 - 13419602
Alignment:
| Q |
73 |
ctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgt |
172 |
Q |
| |
|
|||||||| ||||| || ||||| || |||||| | |||||||||||||||| ||||| ||||||| ||||||||| ||||| | ||||||| || |
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| T |
13419471 |
ctatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt |
13419570 |
T |
|
| Q |
173 |
cggagtagcctccatatgtgatggtgccatca |
204 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
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| T |
13419571 |
cggagtaacctccatatgtgacggtgccatca |
13419602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 13447022 - 13447153
Alignment:
| Q |
73 |
ctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtgt |
172 |
Q |
| |
|
|||||||| |||| || ||||| || |||||| | ||| |||||||||||| ||||| ||||||| ||||||||| ||||| | ||||||| || |
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| T |
13447022 |
ctatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagt |
13447121 |
T |
|
| Q |
173 |
cggagtagcctccatatgtgatggtgccatca |
204 |
Q |
| |
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||||| | |||||||| ||||| ||||||||| |
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| T |
13447122 |
cggagaaacctccataggtgatagtgccatca |
13447153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 47601221 - 47601327
Alignment:
| Q |
1 |
tgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagggctatacaccgtgatcccggcgcagagga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||| | ||| |||||||| ||||| ||||| || || | |
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|
| T |
47601221 |
tgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatatcgaagaggactatacactgtgataccggcacaaagaa |
47601320 |
T |
|
| Q |
101 |
gaggagc |
107 |
Q |
| |
|
||||||| |
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|
| T |
47601321 |
gaggagc |
47601327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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