View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_15 (Length: 356)
Name: NF2045_low_15
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 41733371 - 41733232
Alignment:
| Q |
15 |
cataggccgtctgaatttgtattcgtttcatgttatacgcataccaatgttactcaatttatgagaagagaagctacatttccaaacagagacttggtca |
114 |
Q |
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| T |
41733371 |
cataggccgtctaaatttgtattcgtttcatgttatacgcataccaatgttactcaatttatgagaag-----ctacatttccaaacagagacttggtca |
41733277 |
T |
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| Q |
115 |
tttttaacacatttgaacactcaataagttaatattcataaatta |
159 |
Q |
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| T |
41733276 |
tttttaacacatttgaacactcaataagttaatattcataaatta |
41733232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 41733169 - 41733072
Alignment:
| Q |
165 |
tatggatatggtatggatcacgaggttgcacatgtcttcctcataatgtgtgcgctatatggatcatcattactcaaattggtgagacctgaaatatt |
262 |
Q |
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| T |
41733169 |
tatggatatggtatggatcacgaggttgcacatgtcttccttataatgtgtgcgctatatggatcatcattactcaaattggtgagacctgaaatatt |
41733072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 33441039 - 33440941
Alignment:
| Q |
154 |
aaattatctattatggatatggtatggatcacgaggttgcacatgtcttcctcataatgtgtgcgctatatggatcatcattactcaaattggtgagac |
252 |
Q |
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| T |
33441039 |
aaattatctattatggatatggtatggatcacgaggttgcacatgatttccttataatgtgtgcgctatatgaatcatcatcactcaaattggtgagac |
33440941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 33441239 - 33441180
Alignment:
| Q |
15 |
cataggccgtctgaatttgtattcgtttcatgttatacgcataccaatgttactcaattt |
74 |
Q |
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| T |
33441239 |
cataagccgtctgaatttgtatttgtttcatgtttttcgcataccaatgtgactgaattt |
33441180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 33441167 - 33441115
Alignment:
| Q |
110 |
ggtcatttttaacacatttgaacactc---aataagttaatattcataaatta |
159 |
Q |
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| T |
33441167 |
ggtcatttttaacacatttgaacactcctaaataagttaatgttcataaatta |
33441115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 33440387 - 33440347
Alignment:
| Q |
298 |
ccgaatgaattacagggacatattcaaatattgtatttttt |
338 |
Q |
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| T |
33440387 |
ccgaatgaattatagggaaatattcaaatattgtatttttt |
33440347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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