View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_16 (Length: 356)

Name: NF2045_low_16
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_16
NF2045_low_16
[»] chr5 (18 HSPs)
chr5 (1-346)||(31113121-31113467)
chr5 (4-143)||(10591918-10592057)
chr5 (1-93)||(5123506-5123598)
chr5 (5-120)||(18909313-18909428)
chr5 (32-143)||(2798354-2798464)
chr5 (32-143)||(2804521-2804631)
chr5 (1-151)||(30784994-30785144)
chr5 (1-124)||(22188006-22188127)
chr5 (49-144)||(12682625-12682720)
chr5 (1-68)||(36212962-36213029)
chr5 (45-143)||(28023495-28023593)
chr5 (3-97)||(35774622-35774716)
chr5 (1-77)||(41446660-41446736)
chr5 (1-99)||(18244619-18244717)
chr5 (7-143)||(10795332-10795466)
chr5 (4-125)||(35914431-35914551)
chr5 (4-143)||(3525864-3526003)
chr5 (1-66)||(41433946-41434011)
[»] chr4 (27 HSPs)
chr4 (1-143)||(31307074-31307216)
chr4 (1-144)||(35334106-35334249)
chr4 (4-143)||(14854596-14854735)
chr4 (1-143)||(38766080-38766222)
chr4 (1-144)||(45994512-45994655)
chr4 (2-126)||(46016154-46016281)
chr4 (4-98)||(13948603-13948697)
chr4 (1-98)||(9012306-9012403)
chr4 (1-143)||(35972334-35972476)
chr4 (1-106)||(46250563-46250668)
chr4 (1-97)||(51626314-51626410)
chr4 (4-139)||(17135092-17135226)
chr4 (5-143)||(7096087-7096225)
chr4 (4-139)||(38844179-38844314)
chr4 (1-66)||(33529325-33529390)
chr4 (1-140)||(32005154-32005298)
chr4 (9-144)||(56447139-56447273)
chr4 (3-143)||(13686592-13686733)
chr4 (4-84)||(3649057-3649137)
chr4 (51-122)||(11140469-11140540)
chr4 (2-125)||(51853707-51853828)
chr4 (4-143)||(22189399-22189538)
chr4 (4-107)||(47023429-47023532)
chr4 (2-104)||(14042859-14042961)
chr4 (4-67)||(3976641-3976704)
chr4 (2-84)||(28408537-28408619)
chr4 (53-126)||(56425897-56425970)
[»] chr7 (27 HSPs)
chr7 (1-143)||(29059796-29059938)
chr7 (1-140)||(31492097-31492236)
chr7 (1-143)||(8839289-8839431)
chr7 (1-144)||(19477258-19477400)
chr7 (9-143)||(13254117-13254251)
chr7 (5-144)||(21747052-21747190)
chr7 (1-143)||(28537381-28537519)
chr7 (1-143)||(20207489-20207630)
chr7 (5-144)||(7265325-7265464)
chr7 (7-77)||(14545000-14545070)
chr7 (5-143)||(46373664-46373802)
chr7 (4-144)||(35707837-35707976)
chr7 (23-143)||(40099302-40099422)
chr7 (2-144)||(27484058-27484200)
chr7 (39-144)||(7190405-7190510)
chr7 (45-143)||(2657888-2657986)
chr7 (4-125)||(24579465-24579584)
chr7 (4-88)||(11486755-11486839)
chr7 (5-98)||(24172243-24172338)
chr7 (4-144)||(42741820-42741963)
chr7 (5-143)||(4059705-4059842)
chr7 (1-63)||(37339741-37339803)
chr7 (9-58)||(31776494-31776543)
chr7 (4-114)||(23933662-23933772)
chr7 (4-58)||(29428803-29428857)
chr7 (58-143)||(2371139-2371224)
chr7 (5-125)||(28828777-28828897)
[»] chr8 (19 HSPs)
chr8 (1-151)||(2743916-2744066)
chr8 (1-143)||(4125032-4125174)
chr8 (1-143)||(19715733-19715876)
chr8 (1-143)||(12958093-12958235)
chr8 (4-125)||(15682938-15683059)
chr8 (1-143)||(13468753-13468895)
chr8 (4-144)||(30056012-30056152)
chr8 (1-143)||(30935995-30936137)
chr8 (4-143)||(36994511-36994650)
chr8 (1-83)||(7839261-7839343)
chr8 (22-143)||(35206991-35207112)
chr8 (1-106)||(24988522-24988632)
chr8 (1-126)||(16701387-16701512)
chr8 (47-142)||(27121804-27121899)
chr8 (47-144)||(4321558-4321655)
chr8 (54-143)||(23981534-23981623)
chr8 (16-67)||(8034152-8034203)
chr8 (32-144)||(32422811-32422924)
chr8 (5-125)||(44638992-44639112)
[»] chr1 (35 HSPs)
chr1 (1-144)||(22022110-22022253)
chr1 (1-143)||(16756073-16756215)
chr1 (2-113)||(9780998-9781109)
chr1 (1-101)||(7242815-7242915)
chr1 (4-143)||(45806227-45806366)
chr1 (1-143)||(28724664-28724805)
chr1 (3-143)||(24801372-24801512)
chr1 (4-96)||(36806649-36806741)
chr1 (4-98)||(12035585-12035680)
chr1 (4-123)||(18428153-18428271)
chr1 (9-143)||(10841008-10841143)
chr1 (1-144)||(32534073-32534215)
chr1 (54-144)||(28506279-28506369)
chr1 (1-74)||(42297450-42297523)
chr1 (48-144)||(25655319-25655415)
chr1 (48-144)||(31733746-31733842)
chr1 (48-144)||(36982345-36982441)
chr1 (48-143)||(40019232-40019327)
chr1 (54-144)||(29124735-29124825)
chr1 (7-68)||(32883561-32883622)
chr1 (56-144)||(17600561-17600649)
chr1 (4-120)||(46864105-46864221)
chr1 (5-143)||(10750589-10750726)
chr1 (48-122)||(32883625-32883699)
chr1 (1-107)||(39547372-39547478)
chr1 (16-120)||(36522259-36522363)
chr1 (4-63)||(44913180-44913239)
chr1 (1-63)||(10367575-10367637)
chr1 (1-63)||(15642526-15642588)
chr1 (69-143)||(21774595-21774668)
chr1 (54-151)||(16552484-16552581)
chr1 (49-145)||(35540036-35540132)
chr1 (2-69)||(28286442-28286509)
chr1 (61-151)||(17888729-17888819)
chr1 (23-144)||(13546416-13546537)
[»] chr2 (26 HSPs)
chr2 (1-143)||(5394388-5394529)
chr2 (1-143)||(31579237-31579379)
chr2 (36-143)||(44732616-44732723)
chr2 (4-139)||(18105373-18105508)
chr2 (4-143)||(42745127-42745266)
chr2 (21-143)||(12133258-12133380)
chr2 (9-151)||(33756960-33757102)
chr2 (1-143)||(993745-993886)
chr2 (7-144)||(9438150-9438287)
chr2 (51-143)||(37568785-37568877)
chr2 (3-143)||(44752204-44752344)
chr2 (32-125)||(7157507-7157600)
chr2 (5-125)||(38463964-38464084)
chr2 (1-84)||(38743788-38743871)
chr2 (1-143)||(17981489-17981630)
chr2 (4-57)||(25423821-25423874)
chr2 (5-98)||(37180013-37180101)
chr2 (4-80)||(7020371-7020446)
chr2 (5-93)||(14121894-14121982)
chr2 (54-143)||(34483453-34483541)
chr2 (1-96)||(39401077-39401172)
chr2 (57-144)||(42905689-42905775)
chr2 (69-143)||(28365940-28366014)
chr2 (5-98)||(38373006-38373097)
chr2 (51-143)||(17627550-17627642)
chr2 (33-93)||(39314487-39314547)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-126)||(26339-26464)
[»] chr3 (23 HSPs)
chr3 (1-143)||(30995973-30996115)
chr3 (1-143)||(27763714-27763854)
chr3 (1-143)||(25224690-25224832)
chr3 (32-143)||(38088626-38088737)
chr3 (1-144)||(40294602-40294745)
chr3 (1-143)||(14352545-14352690)
chr3 (1-93)||(20861289-20861381)
chr3 (1-143)||(48204319-48204461)
chr3 (1-126)||(48210968-48211093)
chr3 (1-96)||(1642644-1642739)
chr3 (1-143)||(38331119-38331261)
chr3 (5-144)||(15283065-15283200)
chr3 (5-97)||(55123134-55123226)
chr3 (47-143)||(42514595-42514693)
chr3 (53-126)||(22755652-22755725)
chr3 (3-107)||(15446019-15446127)
chr3 (4-97)||(22288272-22288365)
chr3 (1-43)||(8757435-8757477)
chr3 (1-83)||(39950263-39950345)
chr3 (5-98)||(11767146-11767239)
chr3 (1-66)||(25739155-25739220)
chr3 (4-92)||(21223465-21223553)
chr3 (54-126)||(54877841-54877913)
[»] chr6 (17 HSPs)
chr6 (3-143)||(12411139-12411279)
chr6 (1-144)||(21910195-21910337)
chr6 (4-144)||(31107504-31107644)
chr6 (3-103)||(12836907-12837007)
chr6 (3-143)||(31412114-31412253)
chr6 (1-126)||(28099251-28099376)
chr6 (7-143)||(423646-423782)
chr6 (47-151)||(25084017-25084121)
chr6 (1-57)||(9536844-9536900)
chr6 (1-144)||(21028987-21029134)
chr6 (6-144)||(278382-278519)
chr6 (14-136)||(5944840-5944962)
chr6 (85-144)||(8507135-8507194)
chr6 (49-120)||(29185307-29185378)
chr6 (2-83)||(17177189-17177270)
chr6 (1-77)||(21028850-21028924)
chr6 (1-93)||(28933179-28933271)
[»] scaffold0020 (1 HSPs)
scaffold0020 (69-143)||(167846-167918)
[»] scaffold0009 (2 HSPs)
scaffold0009 (5-64)||(27237-27296)
scaffold0009 (59-146)||(32330-32417)
[»] scaffold0071 (1 HSPs)
scaffold0071 (3-107)||(16065-16173)
[»] scaffold0189 (1 HSPs)
scaffold0189 (34-113)||(10973-11052)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 31113467 - 31113121
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113467 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 31113368  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctttagtccacactttactttactttcctttcggggacatccaatnnnnnnn 200  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||           
T  31113367 gaaccttaattaagctaaaaaagacccgtttcatctcatctaaatgttctttagtcaacactttactttactttcccttcggggacatccaataaaaaaa 31113268  T
Q  201 nnta-ctttcagacttttggctgtactaaggtgtttcttccatagcgcactctctcttaggaagacatttttattgcgttaatatactagagagtttctt 299  Q
       | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  31113267 aaaatctttcagacttttggctgtactaaggtgtttcttccatagcacactctctcttaggaagacatttttattgtggtaatatactagagagtttctt 31113168  T
Q  300 attggtattgctctctccaaggtttcttattcccgcacacaggttct 346  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  31113167 attggtattgctctctccaaggtttcttattcccacacgcaggttct 31113121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 10592057 - 10591918
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||| |||||||||  ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |    
T  10592057 gagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccagga 10591958  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  |||| |||||||||||| ||| ||||||||||||    
T  10591957 ccttggttaatctagaagagacccgttccatctcatctaa 10591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5123506 - 5123598
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 93  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5123506 gcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 18909313 - 18909428
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    |||||||||||||||| |||||||||| |||||| |||| |   ||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggac 18909412  T
Q  105 cttaattaagctagaa 120  Q
    ||| ||||||||||||    
T  18909413 cttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 2798354 - 2798464
Alignment:
Q  32 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgttt 131  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||| || ||||||||| ||||||||  ||||||||||||| ||| ||||    
T  2798354 ccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaagaaacc-gttt 2798452  T
Q  132 catctcatctaa 143  Q
    ||||||||||||    
T  2798453 catctcatctaa 2798464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 2804521 - 2804631
Alignment:
Q  32 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgttt 131  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||| || ||||||||| | ||||||  ||||||||||||| ||| ||||    
T  2804521 ccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaagaaacc-gttt 2804619  T
Q  132 catctcatctaa 143  Q
    ||||||||||||    
T  2804620 catctcatctaa 2804631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 30784994 - 30785144
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||| ||  |||||| || | ||||||  || ||  |||||||||||||||||||  ||||||||| |||| |||| ||||||||| |    
T  30784994 gcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtccaaagctggattcgaaccca 30785093  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 151  Q
      || || |||||||||||||||||  ||| ||||||||||||||| ||||    
T  30785094 agacattgattaagctagaagagactcgttccatctcatctaaatgctctt 30785144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 22188006 - 22188127
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||| |||||||||||| |||||| ||||| || ||||||  |||||||||||| ||| || ||||||||||||| |||| |||| |    
T  22188006 gcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaacgctgttgtatgcccaaggctggattcaaaccca 22188103  T
Q  101 gaaccttaattaagctagaagaga 124  Q
      |||||  ||||| |||||||||    
T  22188104 ataccttggttaagttagaagaga 22188127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 12682720 - 12682625
Alignment:
Q  49 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||| ||||||||||||  || ||||||| |||||||| ||||||||  ||||| ||  ||||||||||||||||  |||||||||||| ||||    
T  12682720 tctcccgaagagttttaacgttgttgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcatttaaa 12682625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36213029 - 36212962
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaaca 68  Q
    |||||||| ||||||||||| ||||||||| | |||||||||| |  |||||||||||||||||||||    
T  36213029 gcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaaca 36212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 28023495 - 28023593
Alignment:
Q  45 aggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||||||||| |||||||||||| ||  ||||| ||||||| ||||||||  || || ||  ||||||||||||||| | ||| ||||||||||||    
T  28023495 aggctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaa 28023593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 35774716 - 35774622
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 97  Q
    ||||| |||| | |||||||||||| ||  |||||| |||| | |||||||||||| ||||||||| || |||||| |||||||| |||||||||    
T  35774716 ggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgcatgtccaaggctaaattcgaac 35774622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41446660 - 41446736
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 77  Q
    ||||||||||||| ||||||| |||||||| ||||||| ||||||  |||||  |||||||||||||| | ||||||    
T  41446660 gcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcat 41446736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18244717 - 18244619
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacct 99  Q
    ||||||||||||| ||| |||||||||| | ||||||||| || |   |||||| |||||||||||  ||||||||||  |||| |||||||| |||||    
T  18244717 gcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaatgctgctgcatgttcaagactgaattcaaacct 18244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 10795332 - 10795466
Alignment:
Q  7 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacct 106  Q
    ||||||||||| | | |||||||| |||||||||||| |   ||||| | ||||||||||  ||||| |||||| ||||||| ||| |||| ||| ||||    
T  10795332 actaatccctcaaattttgtgggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgcctaaggctggatttgaacttaggacct 10795431  T
Q  107 taattaagctagaagagacctgtttcatctcatctaa 143  Q
    |  ||||||  ||||||| | || |||||||||||||    
T  10795432 tggttaagc--gaagagatccgtatcatctcatctaa 10795466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 35914551 - 35914431
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||| ||||| ||||||  |||||||||  ||||||| || |  |||||||||||||| | |||  || ||||||||||| | || ||||||| ||||||    
T  35914551 gagattaatcactcgaggcttgtgggatttaaatgggtggaaaactctccctaagagtgt-aacgttgttgcatgcccaatgttggattcgaatctagaa 35914453  T
Q  104 ccttaattaagctagaagagac 125  Q
    |||| |||||| ||||||||||    
T  35914452 ccttgattaagttagaagagac 35914431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 3525864 - 3526003
Alignment:
Q  4 gagactaatccctcgagtattgtggga-tccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    ||||||||||||   ||| |||||||| || |||| ||||| |  |||||||||| |||||||||| || |||||| | |||  || |||||||| ||||    
T  3525864 gagactaatccccttagtcttgtgggaatctaaataggcggcaaactctccctaaaagttttaacaatgttgcatgtctaagagtggattcgaac-taga 3525962  T
Q  103 accttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||  |||| ||||||||||| ||| |||||||||||||    
T  3525963 atcttggttaaactagaagagacatgtgtcatctcatctaa 3526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41433946 - 41434011
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 66  Q
    ||||||||||||| ||||||| |||||||| | ||||| ||||||  |||||  ||||||||||||    
T  41433946 gcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 41434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 31307074 - 31307216
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  31307074 gcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 31307173  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||| ||| ||||||||||||    
T  31307174 ggaccttggttaagctagaagagacccgttccatctcatctaa 31307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35334106 - 35334249
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | ||||| |||||||||||||| ||||||||||||||||||||||| |||||| |    
T  35334106 gcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaa 35334205  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||  |||||||||||||||| |||| |||||||||||||    
T  35334206 gaaccttggttaagctagaagagacttgttccatctcatctaaa 35334249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 14854735 - 14854596
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||| ||||| ||| |||||||||||| | |||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||    
T  14854735 gagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaa 14854636  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  ||||||||||||||| | ||| ||||||||||||    
T  14854635 ccttggttaagctagaagagaaccgttccatctcatctaa 14854596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38766222 - 38766080
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||| |||| |    
T  38766222 gcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaaccca 38766123  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||  ||| ||||||||||||    
T  38766122 ggaccttggttaagctagaagagactcgttccatctcatctaa 38766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 45994655 - 45994512
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||| |||||| |||||| || |||||||||||  |||||||||||||||||||||||  || |||||||||||||||| ||||||| | |    
T  45994655 gcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatcca 45994556  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    | |||||  ||||||||||||||||||||| |||||||||||||    
T  45994555 ggaccttggttaagctagaagagacctgttccatctcatctaaa 45994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 46016281 - 46016154
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    ||||||||||| | ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  46016281 cggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccag 46016182  T
Q  102 aac---cttaattaagctagaagagacc 126  Q
     ||   |||  |||||||||||||||||    
T  46016181 gacctacttggttaagctagaagagacc 46016154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 13948603 - 13948697
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  13948603 gagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggctggattcgaacc 13948697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9012403 - 9012306
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    |||||||||||||||||||| ||||||||| |||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  9012403 gcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctagattcgaacc 9012306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 35972476 - 35972334
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||  || |||||| |||||||||||| |  |||||||||| ||||||||| |||||| ||||||| ||||| ||||||||| |    
T  35972476 gcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattcgaaccca 35972377  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
      |||||  |||||||||||||| || ||| ||||||||||||    
T  35972376 agaccttggttaagctagaagaggcccgttccatctcatctaa 35972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 46250563 - 46250668
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||| | ||||| || |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||    
T  46250563 gcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgcccaagactggattcgaaccta 46250662  T
Q  101 gaacct 106  Q
    | ||||    
T  46250663 ggacct 46250668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 51626314 - 51626410
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 97  Q
    ||||||||||||| |||||| | ||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  51626314 gcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 17135226 - 17135092
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||||||||||| || |||||  |||||| |||| |  |||||||||||||||||||| ||||||||||| |||||||| ||||||| |||| |    
T  17135226 gagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcacaaggctggattcgaa-ctagga 17135128  T
Q  104 ccttaattaagctagaagagacctgtttcatctcat 139  Q
    | || |||||||||||||||||  || |||||||||    
T  17135127 ctttgattaagctagaagagacacgtgtcatctcat 17135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 7096225 - 7096087
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||| || ||| |||||  || | |||||||||||| |||||||||||||||||||||  |||||||| | |||| ||| |||| |||| | |||    
T  7096225 agactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaac 7096126  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||  ||||||||||||| |||||| |||||||||||||    
T  7096125 cttggttaagctagaagaaacctgtgtcatctcatctaa 7096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 38844179 - 38844314
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||| |||||| ||||||||   ||||||||||| || |||| ||||||||||||||| ||| ||||||||||| |||| ||||||||  |  |    
T  38844179 gagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatga 38844278  T
Q  104 ccttaattaagctagaagagacctgtttcatctcat 139  Q
    ||||  ||||||||||||||||  ||| ||||||||    
T  38844279 ccttggttaagctagaagagactcgttccatctcat 38844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33529390 - 33529325
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 66  Q
    ||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||    
T  33529390 gcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 32005154 - 32005298
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactg-----ctgcatgcccaaggctgaattcga 95  Q
    ||||||||||||| |||||| ||| || |||| |||| ||||| || ||||||||||||||||||||||||      ||||||||||| |||||||||||    
T  32005154 gcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgatgcaatgcatgcccaaagctgaattcga 32005253  T
Q  96 acctagaaccttaattaagctagaagagacctgtttcatctcatc 140  Q
    ||  || || ||  ||||| |||||||||||| || |||||||||    
T  32005254 actcaggactttggttaagttagaagagacctattccatctcatc 32005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 56447139 - 56447273
Alignment:
Q  9 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctta 108  Q
    ||||||||| ||| |||||| |||||||||||  | |  |||||||||||||||||||||||||||||||||||  |||| |||||||||||| || ||     
T  56447139 taatccctcaagtcttgtgg-atccaaatgggtagcaaactctccctaagagttttaacactgctgcatgcccatagctggattcgaacctaggactttg 56447237  T
Q  109 attaagctagaagagacctgtttcatctcatctaaa 144  Q
     |||| |||||||| ||| ||  |||||| ||||||    
T  56447238 gttaaactagaagaaacccgtgacatctcttctaaa 56447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 13686733 - 13686592
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccct-aagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    ||||||||||| ||||||  ||||| || |||||||| ||| |  |||||||| |||||||||||| |||||||| |||||||| || ||||||||| ||    
T  13686733 ggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccag 13686634  T
Q  102 aaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
     |||||  |||||| ||||||||||  |  ||||||||||||    
T  13686633 gaccttggttaagcaagaagagacccatgccatctcatctaa 13686592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 3649057 - 3649137
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 84  Q
    ||||||||||| |||||| ||||| |||||||||| |||| |  ||||||||||||||||||||  || ||||||||||||    
T  3649057 gagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaacgttgttgcatgcccaag 3649137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 11140540 - 11140469
Alignment:
Q  51 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 122  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||| | || |||||  |||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 51853828 - 51853707
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    |||||||||||||||||||||||||| || | |||||| | | |  || ||| ||||||||||||    |||||||||||||||||||||||||||| ||    
T  51853828 cggagactaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagctgcatgcccaaggctgaattcgaacc-ag 51853731  T
Q  102 aaccttaattaagctagaagagac 125  Q
    ||| ||  ||||| ||||||||||    
T  51853730 aactttggttaagttagaagagac 51853707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 22189399 - 22189538
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||| |||||||  |||||||| ||| || ||||| |  |||| ||||||||||||||   |||||||||| ||||| || ||||||||   | |    
T  22189399 gagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctgga 22189498  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  ||||||||||||||||   | |||||||||||||    
T  22189499 ccttggttaagctagaagagactcatgtcatctcatctaa 22189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 47023532 - 47023429
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||| |||||| |||||||| |||||||| ||  |  ||||||||||||||||||||  || |||||||| ||| ||| ||| ||||| || |    
T  47023532 gagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaaccaagga 47023433  T
Q  104 cctt 107  Q
    ||||    
T  47023432 cctt 47023429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 14042961 - 14042859
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    ||||||| ||||||| ||| ||||||| |||||||||| ||  | | |||||| |||||||| ||| | |||||||||||||| ||  ||||||||| ||    
T  14042961 cggagacaaatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcggctgcatgcccaagacttgattcgaacccag 14042862  T
Q  102 aac 104  Q
    |||    
T  14042861 aac 14042859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 3976704 - 3976641
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 67  Q
    ||||| |||||  ||||| |||||||||||||||||||||||   ||||||||| |||||||||    
T  3976704 gagaccaatcctacgagtcttgtgggatccaaatgggcggtaaaatctccctaaaagttttaac 3976641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 28408619 - 28408537
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 84  Q
    |||| |||| || ||||||| ||||| ||||||||||||||| |  |||||| ||||| |||||||  ||||||| |||||||    
T  28408619 cggaaactattctctcgagtcttgtgagatccaaatgggcggcaaactctccataagaattttaacgatgctgcacgcccaag 28408537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 56425970 - 56425897
Alignment:
Q  53 cctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 126  Q
    ||||| ||||||||  ||||  |||||| |||||||||||| ||| ||| ||||||||||||| | ||||||||    
T  56425970 cctaacagttttaatgctgcgacatgcctaaggctgaattcaaacttaggaccttaattaagcaaaaagagacc 56425897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 29059938 - 29059796
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  29059938 gcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 29059839  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||| ||| ||||||||||||    
T  29059838 ggaccttggttaagctagaagagacccgttccatctcatctaa 29059796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31492236 - 31492097
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  31492236 gcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 31492137  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatc 140  Q
    | |||||  ||||||||||||||||| ||| |||||||||    
T  31492136 ggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 8839289 - 8839431
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||| ||  ||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  8839289 gcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaaccca 8839388  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||| ||||||||||||||||    
T  8839389 ggaccttggttaagctagaagagacccgtttcatctcatctaa 8839431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 19477258 - 19477400
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||| || ||||||||| |||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||| |||| |||| |    
T  19477258 gcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaaccca 19477356  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||    
T  19477357 gaaccttggttaagctagaagagacccgttccatctcatctaaa 19477400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 13254117 - 13254251
Alignment:
Q  9 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctta 108  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||  || |||||     
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  109 attaagctagaagagacctgtttcatctcatctaa 143  Q
     ||||||||||||||||| ||| ||||||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaa 13254251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 21747052 - 21747190
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||||| || |||| ||||| ||| || ||    
T  21747052 agactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcctaaagctggattcg-acccaggac 21747150  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||  ||||| ||||||||||| ||| |||||||||||||    
T  21747151 cttggttaagttagaagagacccgttccatctcatctaaa 21747190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28537519 - 28537381
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||| || ||    ||| |||||||||||| |||||||||||||||||||||||  || |||||||||||||||| ||||||||| |    
T  28537519 gcggagactaatccctcaagcat----ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaaccca 28537424  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
     |||||| |||||| ||||||||||| ||| ||||||||||||    
T  28537423 aaaccttgattaagttagaagagacccgttccatctcatctaa 28537381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 20207630 - 20207489
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |||||||||||||  || | |||||| ||||||||||| ||||| |    
T  20207630 gcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatgcctaaggctgaattagaaccca 20207531  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
     || |||| ||||||||||||| | |  | |||||||||||||    
T  20207530 -aatcttagttaagctagaagaaatccatatcatctcatctaa 20207489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 7265325 - 7265464
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    |||||||||  ||||||||||||||| ||||||| || | |  |||||||||||||||||||||  |||||||||||||| ||  || |||||| | |||    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaac 7265424  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
     ||  ||||||||||||||||| || ||||||||| ||||    
T  7265425 tttggttaagctagaagagacccgtgtcatctcatataaa 7265464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 14545070 - 14545000
Alignment:
Q  7 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 77  Q
    |||||||| ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactgctgcat 14545000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 46373802 - 46373664
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||| |||||| |||||| || |||||| ||||| | |||||||||| ||||||||||  || || ||||||||| ||| ||||||||| || |     
T  46373802 agactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggat 46373703  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||  ||||||||||||||||| |  |||||||||||||    
T  46373702 cttgcttaagctagaagagacccgcgtcatctcatctaa 46373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 35707976 - 35707837
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||| ||||| ||||| ||||||| || | | ||||||||||| |||||||  || |||||| |||| | || ||||||||| ||||    
T  35707976 gagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatgtccaaagttggattcgaacc-agaa 35707878  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||  |||| ||||||||||||||||  |||| |||||||    
T  35707877 ccttggttaaactagaagagacctgttcaatctaatctaaa 35707837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 40099302 - 40099422
Alignment:
Q  23 ttgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 122  Q
    ||||||||  ||||||||||| | ||||||||||||||||||||  |||||||||  |||| |||| |||||||   || | |||| |||||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  123 gacctgtttcatctcatctaa 143  Q
    |||| ||| ||||||||||||    
T  40099402 gacccgttccatctcatctaa 40099422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 27484058 - 27484200
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    |||||| ||||||||| || || ||| || |||||| |  || | |||||||| |||||||||||| |||||||||||||| ||||| |||  |||  ||    
T  27484058 cggagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcag 27484157  T
Q  102 aaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
     |||||  |||||||||||||||| ||| ||||||||||||||    
T  27484158 gaccttggttaagctagaagagacttgtgtcatctcatctaaa 27484200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 7190405 - 7190510
Alignment:
Q  39 ggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctca 138  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||||| ||||||||| |||  | ||||||  |||||||||||||||  | || |||||||    
T  7190405 ggcggtaagttctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctca 7190504  T
Q  139 tctaaa 144  Q
    ||||||    
T  7190505 tctaaa 7190510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 2657888 - 2657986
Alignment:
Q  45 aggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||||| |||||||||||||  ||||||||||||||||||| ||| ||||  ||  |||| |||||| ||||||||||  ||| ||||||||||||    
T  2657888 aggctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaa 2657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 24579465 - 24579584
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||| ||||||| || | |||||||||||| ||| |  ||||||||||| |||||| || ||||||||||  || |||||||||||||  ||||    
T  24579465 gagactaatctctcgagtcttctaggatccaaatggacggca--ctctccctaagtgttttatcaatgctgcatgcgtaaagctgaattcgaactcagaa 24579562  T
Q  104 ccttaattaagctagaagagac 125  Q
    ||||  |||| |||||||||||    
T  24579563 ccttggttaaactagaagagac 24579584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 11486755 - 11486839
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctg 88  Q
    |||||||||| || ||| ||||||| | |||||||||||| | ||||| | ||||||||||||||| | ||||||||||||||||    
T  11486755 gagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacagatgcatgcccaaggctg 11486839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 24172338 - 24172243
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctcccta--agagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    |||||||||| ||||| |||||||||||||| ||||||| | |||||| |||  |||||||||||  || ||||||||||||| || |||||||||    
T  24172338 agactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttgcatgcccaaggttggattcgaacc 24172243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 42741820 - 42741963
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc----atgcccaaggctga-attcgaacc 98  Q
    |||| |||||||||||||||| ||| | ||||||||| || ||| ||||||||| |||||||||||||||||    ||| |  || || | |||||||||    
T  42741820 gagattaatccctcgagtattatgg-acccaaatgggtggcaggttctccctaaaagttttaacactgctgcgcaaatg-cggagactaatattcgaacc 42741917  T
Q  99 tagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||| || ||  ||||| ||||||||||||||| |||||||||||||    
T  42741918 taggacattggttaagatagaagagacctgttccatctcatctaaa 42741963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 4059705 - 4059842
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||||||||||| ||||| || ||||||   ||| |  ||||| ||||||||||||||  || ||||||| |||||||| ||||||||  || ||    
T  4059705 agactaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcag-ac 4059803  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||  |||| ||| ||||||| ||| |||| ||||||||    
T  4059804 cttggttaaactaaaagagacatgtgtcatgtcatctaa 4059842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37339741 - 37339803
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 63  Q
    |||||||||||||||||||| ||| ||||| |||||| ||||| || ||||| ||||||||||    
T  37339741 gcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 31776543 - 31776494
Alignment:
Q  9 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaag 58  Q
    |||||||||||||||||||||| |||||||||| |  |||||||||||||    
T  31776543 taatccctcgagtattgtgggacccaaatgggcagctggctctccctaag 31776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 23933662 - 23933772
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||||||| |||||||| | | | |||||||||| |  |||||||||| ||||||||  ||  |||| || |||| ||| ||||||||| || |    
T  23933662 gagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttgcaagctcaagactggattcgaacccagga 23933761  T
Q  104 ccttaattaag 114  Q
    ||||| |||||    
T  23933762 ccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 29428803 - 29428857
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaag 58  Q
    ||||||||||||||||  |||||||||||||||||| ||| |  |||||||||||    
T  29428803 gagactaatccctcgaacattgtgggatccaaatggtcggcaaactctccctaag 29428857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 2371224 - 2371139
Alignment:
Q  58 gagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||| ||||||||| || ||| |||||||||||   || |||||| | || |||||||||| | || |||||||||||||    
T  2371224 gagttttaacgctgctgcattcctaagcctgaattcgaattcaggaccttagtcaatctagaagagaaccgtgtcatctcatctaa 2371139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 28828777 - 28828897
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    |||||||||| | |||  ||||| || |||||||| || ||  ||||| || ||||||||||| ||||| ||||   || | |||||||||||||| ||     
T  28828777 agactaatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtttaaagttgaattcgaacctaaaat 28828876  T
Q  105 cttaattaagctagaagagac 125  Q
     ||| ||||||||||||||||    
T  28828877 attagttaagctagaagagac 28828897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2744066 - 2743916
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| |||||||| ||  | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  2744066 gcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 2743967  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 151  Q
    | |||||  ||||||||||||||||| ||| ||||||||||||||| ||||    
T  2743966 ggaccttggttaagctagaagagacccgttccatctcatctaaatgctctt 2743916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 4125032 - 4125174
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |    
T  4125032 gcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaaccca 4125131  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | || ||  ||||||||||||||||| ||| ||||||||||||    
T  4125132 ggacattggttaagctagaagagacccgttccatctcatctaa 4125174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 19715733 - 19715876
Alignment:
Q  1 gcggagactaatccc-tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacct 99  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |||||||||     
T  19715733 gcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaaccc 19715832  T
Q  100 agaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    || |||||  ||||||||||| |||| |||| ||||||||||||    
T  19715833 aggaccttggttaagctagaaaagacatgttccatctcatctaa 19715876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 12958093 - 12958235
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||| |||| |||| |    
T  12958093 gcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaaccca 12958192  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
      |||||  ||||||||||||||||  ||| ||||||||||||    
T  12958193 tgaccttggttaagctagaagagactagttccatctcatctaa 12958235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 15683059 - 15682938
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||| |||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || |    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagga 15682960  T
Q  104 ccttaattaagctagaagagac 125  Q
    |||| |||||||||||||||||    
T  15682959 ccttgattaagctagaagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 13468753 - 13468895
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||| ||||| |||||||||  ||||||||||| || ||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |    
T  13468753 gcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaaccca 13468852  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||| ||| ||||| ||||||    
T  13468853 ggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 30056012 - 30056152
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||||||  |||||||||||| ||||||| ||| ||||| |  |    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatga 30056111  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||  |||||||||||||||| |||| |||||||||||||    
T  30056112 ccttcgttaagctagaagagacatgttccatctcatctaaa 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 30936137 - 30935995
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||  ||||| ||| |||||||||||| |||||||||||||||||||||||  ||||||||||  ||||||| ||||||||  |    
T  30936137 gcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactca 30936038  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||| ||||||||||| ||| ||||||||||||    
T  30936037 ggaccttggttaagttagaagagacccgttccatctcatctaa 30935995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 36994511 - 36994650
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||||||||||  |||||||| |||||||||| | |  |||||| ||||||||||||| |||||||||| ||||||||| ||||||||| || |    
T  36994511 gagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccagga 36994610  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  |||| ||||||||||| |||  ||||| ||||||    
T  36994611 ccttggttaaactagaagagacatgtgccatcttatctaa 36994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7839261 - 7839343
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaa 83  Q
    |||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||  |||||||||||||||    
T  7839261 gcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatgcccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 35207112 - 35206991
Alignment:
Q  22 attgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaag 121  Q
    ||||||||| |||||||| ||  | ||| ||| ||||||||||||| |||||||||| |||||| | |||||||||| |||| |||  ||||| ||||||    
T  35207112 attgtgggacccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaag 35207013  T
Q  122 agacctgtttcatctcatctaa 143  Q
    ||||||||||||||||||||||    
T  35207012 agacctgtttcatctcatctaa 35206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24988632 - 24988522
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggct-----ctccctaagagttttaacactgctgcatgcccaaggctgaattcga 95  Q
    ||||||||||||||||||||||||||||||  |||||| |||| | |||     ||||| |||||||||| |||||||||||||||||||||| |||| |    
T  24988632 gcggagactaatccctcgagtattgtgggactcaaatgagcggcaagctatcccctccccaagagttttagcactgctgcatgcccaaggctggattcaa 24988533  T
Q  96 acctagaacct 106  Q
    |||||||||||    
T  24988532 acctagaacct 24988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 16701387 - 16701512
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||| ||||| | ||||||||  |||||||||   |  ||||||||||||| |||||  || ||| ||| ||||||||| ||||||||| |    
T  16701387 gcggagactaatctctcgaatcttgtgggactcaaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaaccca 16701486  T
Q  101 gaaccttaattaagctagaagagacc 126  Q
    |||||||| ||||| |||||||||||    
T  16701487 gaaccttagttaagatagaagagacc 16701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 27121804 - 27121899
Alignment:
Q  47 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatcta 142  Q
    ||||| ||||| ||||||||||||| |||||||  || |||| ||||||||| ||||| ||  ||||||||||||||||| || | ||||||||||    
T  27121804 gctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 4321558 - 4321655
Alignment:
Q  47 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||||||||||||||  |  |||||| | ||| ||| |||| |||| ||||||||| ||||||||||||| | || | ||||||||||||||    
T  4321558 gctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaa 4321655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 23981534 - 23981623
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||||||||||  | ||||||| |||| |||||||||||| | |||||| || |||||||| |||||||  || |||||| ||||||    
T  23981534 ctaagagttttaacgttcctgcatgtccaaagctgaattcgaatccagaaccctagttaagctaaaagagactcgtgtcatctgatctaa 23981623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 8034152 - 8034203
Alignment:
Q  16 tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 67  Q
    ||||||||||||||| |||||||| | | | |||||||||||||||||||||    
T  8034152 tcgagtattgtgggacccaaatggactgcaagctctccctaagagttttaac 8034203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 32422811 - 32422924
Alignment:
Q  32 ccaaatgggcggtaggctctccctaagagttttaacactgctgca-tgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtt 130  Q
    |||||||||||| |   |||||| || |||||||||||||||||| ||||||||  |||||||||  | || | |||  ||||| | |||||||| |||     
T  32422811 ccaaatgggcggcaatttctcccaaaaagttttaacactgctgcattgcccaagattgaattcgattccaggatcttggttaaggttgaagagacttgtg 32422910  T
Q  131 tcatctcatctaaa 144  Q
    ||||||||||||||    
T  32422911 tcatctcatctaaa 32422924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 44639112 - 44638992
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||| | | |||||||||||   |||||| |||| |  ||||||||||||||||||||  || ||||||| ||||| || |||| ||   || ||    
T  44639112 agactaatctcccaagtattgtggggctcaaatgtgcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggac 44639013  T
Q  105 cttaattaagctagaagagac 125  Q
    ||| |||||| ||||||||||    
T  44639012 cttgattaagttagaagagac 44638992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 22022253 - 22022110
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||||| |||||||||| ||||||||| || | | ||||||||||||||||||  |||||||||||||||||||| ||||||||| |    
T  22022253 gcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcgaaccca 22022154  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
     ||||||| ||||||||||||||||||||| |||||||||||||    
T  22022153 caaccttagttaagctagaagagacctgttccatctcatctaaa 22022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 16756215 - 16756073
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| |||||||  ||  | ||||||||||||||||||||| || |||||||||||| ||||||||| |||| |    
T  16756215 gcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaaccca 16756116  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||  ||||||||||||||| | ||| ||||||||||||    
T  16756115 gaaccttggttaagctagaagagatccgttccatctcatctaa 16756073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 9780998 - 9781109
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 101  Q
    |||| |||||||||||||| ||||||||| ||||||||||||  | |||||||||||||||||||| |||||||||||||||||||| ||||||||  |     
T  9780998 cggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaa 9781097  T
Q  102 aaccttaattaa 113  Q
     |||||||||||    
T  9781098 gaccttaattaa 9781109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7242815 - 7242915
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||| ||||||||||||||||||||  ||||||||| ||||| ||| |||||||||||    
T  7242815 gcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaagactggattcgaaccta 7242914  T
Q  101 g 101  Q
    |    
T  7242915 g 7242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 45806366 - 45806227
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||  |||| ||||||| ||   |||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||  || |    
T  45806366 gagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcagga 45806267  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  ||||| ||||||||||| |||  |||||||||||    
T  45806266 ccttggttaagatagaagagacccgttctatctcatctaa 45806227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28724805 - 28724664
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||  ||||| |||  ||||||| ||| || |||| ||||||||||||||||||| ||||||  |||||||||||||||| | |    
T  28724805 gcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatcca 28724706  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | | ||| |||||||||||||||||  ||| ||||||||||||    
T  28724705 gga-ctttattaagctagaagagactcgttccatctcatctaa 28724664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 24801512 - 24801372
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    ||||||||||| || |||| ||||||||  ||||||| |||||  ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||     
T  24801512 ggagactaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaagg 24801413  T
Q  103 accttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    || ||| |||| ||| |||| | | || |||||||||||||    
T  24801412 actttagttaatctataagaaatccgtgtcatctcatctaa 24801372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 36806741 - 36806649
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaa 96  Q
    ||||||||||||||||| ||||||| | |||||||||||| || | |||||||||||||||||| || ||| |||||||||||||||||||||    
T  36806741 gagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatgcccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 12035680 - 12035585
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagag-ttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    ||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||| |||||||| || |||||||| ||||||| |||||||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 18428153 - 18428271
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||| ||||||||  |||||||| | | || |||||||||| ||||||||||||||||||||||||||| || ||||||| | ||||    
T  18428153 gagactaatccctcgagcattgtgggg-ccaaatggacagcagactctccctaaaagttttaacactgctgcatgcccaaggttggattcgaatccagaa 18428251  T
Q  104 ccttaattaagctagaagag 123  Q
    ||||  |||||||| |||||    
T  18428252 ccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 10841143 - 10841008
Alignment:
Q  9 taatccctcgagtattgtgggatcc-aaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctt 107  Q
    ||||||||| || ||||||||| || ||||||| || | | ||||||||||| |||||||  || | |||||||||||||||||| ||||| | || |||    
T  10841143 taatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatctt 10841044  T
Q  108 aattaagctagaagagacctgtttcatctcatctaa 143  Q
      ||||| ||||||||||||||||||||||||||||    
T  10841043 ggttaagatagaagagacctgtttcatctcatctaa 10841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32534215 - 32534073
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||| | |||||| |||||| || || ||||||||||| |||||| ||||||||||||||  || ||||||| ||| |||||||| ||| | |    
T  32534215 gcggagactaacctctcgagcattgtgaga-cctaatgggcggtaagctctctctaagagttttaacgttgttgcatgctcaaagctgaatttgaatcca 32534117  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
     ||||||  ||||||||||||| ||| || |||| |||||||||    
T  32534116 aaaccttggttaagctagaagaaacccgtgtcatatcatctaaa 32534073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 28506369 - 28506279
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||| |||||||||||||| |||| | | |||||||| | ||||||||| |||| ||||||||||||||| |||| |||||||||    
T  28506369 ctaagagtttcaacactgctgcatgtccaaagttaaattcgaatccagaaccttagttaaactagaagagacctgtgtcatttcatctaaa 28506279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42297450 - 42297523
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 74  Q
    |||||||||||||||||||| |||||| || |||||||| ||| || |||||||||||||||||||| ||||||    
T  42297450 gcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgctg 42297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 25655319 - 25655415
Alignment:
Q  48 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||| ||||||||||||||  |||||||||||||| | | |||||||||| |||||||| |||||| ||||||| |  |||| |||||||||||||    
T  25655319 ctctctctaagagttttaacgttgctgcatgcccaatgttaaattcgaacccagaaccttgattaagttagaagatatttgttccatctcatctaaa 25655415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 31733746 - 31733842
Alignment:
Q  48 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||||||||||||| |||||||||||| || |||||||||||||| | ||| ||  ||||| ||||||| || ||| | ||||||||||||    
T  31733746 ctctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaa 31733842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 36982441 - 36982345
Alignment:
Q  48 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||||||||||||||||||  || |||||| | |||||||||||||||||    |||||  |||| ||||||||||||||| ||||||||||||||    
T  36982441 ctctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaa 36982345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 40019327 - 40019232
Alignment:
Q  48 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| | |||||| |||||| ||||||||||  || |||| ||||||||    
T  40019327 ctctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaa 40019232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 29124825 - 29124735
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||||||| ||||||||||||||| |||| ||||||||  |  ||| |  ||||||||||||||||  |||||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaa 29124735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 32883561 - 32883622
Alignment:
Q  7 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaaca 68  Q
    ||||||||||||||| ||||||| ||||||||||||| |  |||||||||||||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggcaaactctccctaagagttttaaca 32883622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 17600561 - 17600649
Alignment:
Q  56 aagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||||||||||  || ||||||| ||||||||||||| |||| |  |||||  ||||||||||||||||| || ||||||||||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaa 17600649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 46864221 - 46864105
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||  ||||||  | |||||||| ||| | | ||||||||||| ||||||| || |||||||||||| |||| ||| ||||| | ||    
T  46864221 gagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaacccaaaa 46864122  T
Q  104 ccttaattaagctagaa 120  Q
    | || ||||||||||||    
T  46864121 ctttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 10750726 - 10750589
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    |||||||||||||||  |||||| ||||||||||||||| | || |  ||||||||||||||| ||| || |||||||||  |  ||||||||| |  ||    
T  10750726 agactaatccctcgaacattgtgcgatccaaatgggcggcaagcgc-acctaagagttttaacgctgatgtatgcccaagattagattcgaacccaagac 10750628  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||  ||||  ||||| |||| |||||||||||||||||    
T  10750627 cttggttaaattagaaaagacatgtttcatctcatctaa 10750589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 32883625 - 32883699
Alignment:
Q  48 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 122  Q
    |||||||||||||||||||| |||||||||| |||| |||| ||||||||| | || |||  |||||||||||||    
T  32883625 ctctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 39547372 - 39547478
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||| |||||| ||||  |||||| || | |||| ||||| || ||| ||||||||||||| |||||||||||||| |||| ||| ||||||||| |    
T  39547372 gcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaagactggattcgaaccca 39547471  T
Q  101 gaacctt 107  Q
     ||||||    
T  39547472 taacctt 39547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 36522259 - 36522363
Alignment:
Q  16 tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagc 115  Q
    ||||| |||||||||  ||||||| ||| |  ||||||||||||||||||||  ||||||||| | ||| ||| |||||||| |||||  ||| ||||||    
T  36522259 tcgagcattgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaacttagaaatttagttaagc 36522358  T
Q  116 tagaa 120  Q
    |||||    
T  36522359 tagaa 36522363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 44913239 - 44913180
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 63  Q
    |||||||||| |||||| ||||||||| ||| |||||||| | |||||||||||||||||    
T  44913239 gagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10367637 - 10367575
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 63  Q
    ||||||| |||||| ||||| ||||| ||| ||||||||||||||| |||||| |||||||||    
T  10367637 gcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15642588 - 15642526
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 63  Q
    ||||||| ||||| |||||| ||||||||| |||||||||||| |  ||||||||||||||||    
T  15642588 gcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 21774668 - 21774595
Alignment:
Q  69 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||| ||||| ||| ||||||||| | |||||| ||||||||||||||||| || | ||||||||||||    
T  21774668 ctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagacatg-tgcatctcatctaa 21774595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 16552581 - 16552484
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 151  Q
    |||||||||||||| | |||| ||| |||| | |||||| ||| | | || ||| ||||||||| |||||| |||| ||||||||||||| |||||||    
T  16552581 ctaagagttttaacgcagctgtatgtccaatgttgaatttgaatccataatcttgattaagctataagagatctgtgtcatctcatctaagtgttctt 16552484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 35540036 - 35540132
Alignment:
Q  49 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaat 145  Q
    |||| ||||||||||||||  || ||||||| |||||||||||||  ||  |||||||| ||||||||| |||| |  | |||||||||||| ||||    
T  35540036 tctctctaagagttttaacgttgttgcatgcacaaggctgaattcagactcagaaccttgattaagctaaaagaaatttatttcatctcatccaaat 35540132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 28286442 - 28286509
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacac 69  Q
    ||||||||||| | ||| ||||||||||||  |||||||||| || |||||||||| | |||||||||    
T  28286442 cggagactaattcatcgggtattgtgggatttaaatgggcggcagactctccctaaaaattttaacac 28286509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 17888819 - 17888729
Alignment:
Q  61 ttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 151  Q
    ||||||| ||| |||||||| |||| |  || |||||| | || |||| |||||||||||||||| ||  |||||||||||||| ||||||    
T  17888819 ttttaacgctgttgcatgcctaaggttagatccgaacccaaaatcttagttaagctagaagagacatgcgtcatctcatctaaacgttctt 17888729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 13546537 - 13546416
Alignment:
Q  23 ttgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 122  Q
    ||||||||| |||||||||||||  |||||| |||||||||||||| || | ||||   ||| ||| ||||||||| |  || ||| ||||| |||||||    
T  13546537 ttgtgggattcaaatgggcggtaaactctccataagagttttaacattgttacatgtataagactggattcgaacccacgactttagttaagttagaaga 13546438  T
Q  123 gacctgtttcatctcatctaaa 144  Q
    ||  ||  || |||||||||||    
T  13546437 gatatgcgtcgtctcatctaaa 13546416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 5394529 - 5394388
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |    
T  5394529 gcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctgcatgcccaaggctggattcgaaccca 5394431  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||  ||| ||||||||||||    
T  5394430 ggaccttggttaagctagaagagactcgttccatctcatctaa 5394388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 31579237 - 31579379
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||| |||||| ||||||| |||||||||   |||||||||| || |||||||||| ||||||||||||| |||||||||||||||| ||||||||| |    
T  31579237 gcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatgcccaaggctggattcgaaccca 31579336  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
      ||||| |||||||||||||||||| ||| ||||||||||||    
T  31579337 agaccttgattaagctagaagagacccgttacatctcatctaa 31579379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 44732616 - 44732723
Alignment:
Q  36 atgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatc 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||  |||||||| |||||||| ||| ||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatc 44732715  T
Q  136 tcatctaa 143  Q
    ||||||||    
T  44732716 tcatctaa 44732723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 18105373 - 18105508
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||| |||||||  || |||||||||||||||| ||||||||| || |    
T  18105373 gagactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccagga 18105472  T
Q  104 ccttaattaagctagaagagacctgtttcatctcat 139  Q
    ||||  ||||||||||||||||  ||| ||||||||    
T  18105473 ccttggttaagctagaagagactcgttccatctcat 18105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 42745127 - 42745266
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    ||||||||||||||||  ||||||| | |||||| ||| | || ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |  |    
T  42745127 gagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaaga 42745226  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||  |||||||| |||||||| ||| ||||||||||||    
T  42745227 ccttggttaagctataagagacccgttccatctcatctaa 42745266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 12133258 - 12133380
Alignment:
Q  21 tattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaa 120  Q
    |||||| ||| |||||||| ||| |||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |  ||||| ||||||||||||    
T  12133258 tattgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaa 12133357  T
Q  121 gagacctgtttcatctcatctaa 143  Q
    |||||  ||| ||||||||||||    
T  12133358 gagactcgttccatctcatctaa 12133380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 33757102 - 33756960
Alignment:
Q  9 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctta 108  Q
    ||||||||| || |||||| ||| |||||| |||  | ||||| ||||||||||||||| ||  || |||| |||||||||||||||||  ||||||||     
T  33757102 taatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaaccttg 33757003  T
Q  109 attaagctagaagagacctgtttcatctcatctaaatgttctt 151  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  33757002 attaagctagaagagacccgtgtcatctcatctaagtgttctt 33756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 993886 - 993745
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||| |||||||| |  |||||||| ||| |||||||||||| | | ||||||||||||||||| | ||||||||||||||||| |||||||||||| |    
T  993886 gcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttta-cgctgctgcatgcccaaggttgaattcgaaccca 993788  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  |||||||| |||||||  || |||||||||||||    
T  993787 ggaccttggttaagctataagagacacgtgtcatctcatctaa 993745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 9438150 - 9438287
Alignment:
Q  7 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacct 106  Q
    ||||||||||| || |||||||||  ||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| |  || |    
T  9438150 actaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaaccaaagactt 9438249  T
Q  107 taattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |  |||||||| ||||||   ||| |||||||||||||    
T  9438250 tggttaagctaaaagagattcgttccatctcatctaaa 9438287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 37568785 - 37568877
Alignment:
Q  51 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||  ||||||||||||| ||| ||| ||||||||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaa 37568877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 44752204 - 44752344
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    |||||||||||||||||||||||| | | |||||| || || | |||||||| ||||||||||||  || |||||||||||| ||  ||||||||||||     
T  44752204 ggagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctagg 44752303  T
Q  103 accttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |  ||  |||||||||||||||| ||| |||||||||||||    
T  44752304 agtttggttaagctagaagagacttgtatcatctcatctaa 44752344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 7157600 - 7157507
Alignment:
Q  32 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagac 125  Q
    |||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||  |||||||||||| | |||  ||||| ||||||||||    
T  7157600 ccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac 7157507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 38464084 - 38463964
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||| ||||||||||||||||  ||||| | ||||  |||| | | ||||||||||||  || |||||||||||||||| ||||||| |||||||    
T  38464084 agactaatcactcgagtattgtgggactcaaatagacggttagctccctccaagagttttaacggtgttgcatgcccaaggctggattcgaatctagaac 38463985  T
Q  105 cttaattaagctagaagagac 125  Q
     ||  ||||| ||||| ||||    
T  38463984 tttggttaagttagaaaagac 38463964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38743871 - 38743788
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 84  Q
    ||||||||||||||||  || |||||| |||||||||| |||| | |||||||| || |||||||||  |||||||||||||||    
T  38743871 gcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcccaag 38743788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 17981630 - 17981489
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||| |||||| ||||||||| ||||||  |||| | ||||||||||||||||||||   || |||||||||||| ||| |||  ||   |    
T  17981630 gcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttgttgcatgcccaagactggatttaaattca 17981532  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | || ||  ||||||||||||||||  ||| ||||||||||||    
T  17981531 ggactttggttaagctagaagagactcgttccatctcatctaa 17981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 25423874 - 25423821
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaa 57  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||    
T  25423874 gagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 37180013 - 37180101
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    ||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||     |||||| |||||| ||||| ||| |||||||||    
T  37180013 agactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgttgcatgtccaagactggattcgaacc 37180101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 7020371 - 7020446
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 80  Q
    |||||||||| |||||| ||||| ||| |||||||||||| | | ||||||||||| |||||||| |||||||||||    
T  7020371 gagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcc 7020446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 14121894 - 14121982
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 93  Q
    |||||||||||||||| |||||||||  ||||||||||| | | |||| |||||| |||||||  |||||||||  |||| ||||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaattc 14121982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 34483541 - 34483453
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||||||| ||| |||||| ||||| ||||||| ||||| ||||| ||  ||||||||||| |||| ||| |||||| ||||||    
T  34483541 ctaagagttttaacgctgttgcatgtccaagactgaatttgaacc-agaactttggttaagctagaaaagacatgtgtcatcttatctaa 34483453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39401077 - 39401172
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaa 96  Q
    |||||| |||||| | |||| ||||||||| | |||||| ||    ||||||||||| ||||||||   | |||||||||||||||||||||||||    
T  39401077 gcggagtctaatctcacgagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattcgaa 39401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 42905689 - 42905775
Alignment:
Q  57 agagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||||||||||||||| | |||  || ||||||| |||| |||||| |||||||| |||||| | |  ||||||||||||||    
T  42905689 agagttttaacactgctgcatgacaaagtttggattcgaa-ctaggaccttagttaagctaaaagagatccgcgtcatctcatctaaa 42905775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 28366014 - 28365940
Alignment:
Q  69 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||||||||||||| ||||||||  |  |||||  ||||| ||||||||||  ||| ||||||||||||    
T  28366014 ctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaa 28365940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 38373006 - 38373097
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    |||||||| ||| ||| ||||||||| |||  ||||||| | ||||| ||||||||||||| | |||||||||||  |||| || |||||||||    
T  38373006 agactaattccttgagcattgtgggaccca--tgggcggcaagctcttcctaagagttttaccgctgctgcatgcataaggttggattcgaacc 38373097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 17627642 - 17627550
Alignment:
Q  51 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||||| |||||||  || |||||||||||||||| ||||||||  || |||||  ||||  ||||||||||  || ||||||| |||||    
T  17627642 tccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagacgcgtgtcatctcgtctaa 17627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 39314547 - 39314487
Alignment:
Q  33 caaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 93  Q
    ||||||||||| |  ||||||||| |||||||||| | |||||||||||||  ||||||||    
T  39314547 caaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattc 39314487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26464 - 26339
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||| |||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  26464 gcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaaccca 26365  T
Q  101 gaaccttaattaagctagaagagacc 126  Q
    | |||||  |||||||||||||||||    
T  26364 ggaccttggttaagctagaagagacc 26339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 30995973 - 30996115
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||||||||| ||| |||||||| || |||||||||||||||||||| ||| |||||||||||||  | ||||||||| |    
T  30995973 gcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaaccca 30996072  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||| ||||||||||| ||| ||||||||||||    
T  30996073 ggaccttggttaagatagaagagacccgttccatctcatctaa 30996115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27763854 - 27763714
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| |||||||||  ||||||| ||| || |||||||||||||||||||||||| || ||||||||||||| ||||||||| |    
T  27763854 gcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaaccca 27763755  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  |||||||||  |||||| |||  |||||||||||    
T  27763754 ggaccttggttaagctag--gagacccgttctatctcatctaa 27763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 25224832 - 25224690
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||| ||| ||||||||| | |||||||||| | | ||||| ||||||||||||| ||||||||| |||||  ||  ||||||||| |    
T  25224832 gcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcgaaccca 25224733  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | |||||  ||||||||||||||||| ||||||||||||||||    
T  25224732 ggaccttggttaagctagaagagacccgtttcatctcatctaa 25224690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 38088737 - 38088626
Alignment:
Q  32 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgttt 131  Q
    |||||| ||||| | | ||||||||||||||||||| || |||||||||||| |||| |||||||||| |||||||  ||||||||||||||||| ||||    
T  38088737 ccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgttt 38088638  T
Q  132 catctcatctaa 143  Q
    ||||||||||||    
T  38088637 catctcatctaa 38088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 40294745 - 40294602
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||| |||||||||||||||| |||||| |||| | ||| |||||||||||||||||| || |||||  ||||||||| ||||||||  |    
T  40294745 gcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactca 40294646  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    | ||||| |||||| |||| |||||  || ||||||||||||||    
T  40294645 ggaccttgattaaggtagaggagactcgtgtcatctcatctaaa 40294602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 14352690 - 14352545
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc----ccaaggctgaattcgaa 96  Q
    ||||||||||||||||||||||||| || |||||||||| ||  | ||||||| |||||||||||||||||||||||||    ||||||||| |||||||    
T  14352690 gcggagactaatccctcgagtattg-ggtatccaaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggattcgaa 14352592  T
Q  97 cctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    || |  | |||  |||||||||||||||| |||| ||||||||||||    
T  14352591 ccgaatatcttggttaagctagaagagacttgttccatctcatctaa 14352545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 20861381 - 20861289
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 93  Q
    |||||||||||||||||||| ||| ||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  20861381 gcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 48204319 - 48204461
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||| |||||||||| ||| ||||||| | |||||||| ||  | |||||||||||| ||||||||  ||||||||||||||||||| ||||||||| |    
T  48204319 gcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaaccca 48204418  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
      |||||  ||||||||||||||||  ||| ||||||||||||    
T  48204419 agaccttggttaagctagaagagactcgttccatctcatctaa 48204461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 48210968 - 48211093
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||  ||| ||||||||||||||||| | |||| | ||| | ||||||| |||||||||||||  |||||||||| |||||||| ||||||||| |    
T  48210968 gcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaa 48211067  T
Q  101 gaaccttaattaagctagaagagacc 126  Q
     |||||| |||||| |||||||||||    
T  48211068 aaaccttgattaagttagaagagacc 48211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1642739 - 1642644
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaa 96  Q
    ||||| ||||||||||| |||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||||||||  |||||||  |||||||    
T  1642739 gcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctgcatgttcaaggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38331261 - 38331119
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    ||||||||||||||||| |  ||||||||| |||||||||||| | |||||| |||||||||||||| ||||||||||| ||| | || |||| |||  |    
T  38331261 gcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctgcatgctcaaagttggattcaaactca 38331162  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    | || ||  ||||| ||||||||||| | | ||||||||||||    
T  38331161 ggacattggttaagttagaagagacccgatccatctcatctaa 38331119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 15283200 - 15283065
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 104  Q
    ||||||||| |||||| ||||||||| |||||||||||| |  || ||| |||||||||||| | ||||||||||||| | ||| |||||||||    ||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaaga-tgctgcatgcccatgactggattcgaacc---cac 15283105  T
Q  105 cttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||| ||||| ||||||||||  || ||||||||||||||    
T  15283104 cttagttaagttagaagagactcgtatcatctcatctaaa 15283065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 55123226 - 55123134
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 97  Q
    |||||||||||||||| |||||| || |||||||||  | | ||||||||||||| ||||||| |||||||||  ||||||||| ||||||||    
T  55123226 agactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 42514693 - 42514595
Alignment:
Q  47 gctctccctaagagttttaacac--tgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    ||||||||||||||||||||| |  || ||||||||||| | || ||||||||| |  || ||| ||||||||||||||||  ||||||||||||||||    
T  42514693 gctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcatctaa 42514595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 22755725 - 22755652
Alignment:
Q  53 cctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 126  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||| || ||  |||| |||||| |||||    
T  22755725 cctaagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagacc 22755652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 15446127 - 15446019
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc----atgcccaaggctgaattcgaacc 98  Q
    |||||||||||| ||||| |||||| || |||||||| ||| |  |||||| || || | |||||||||||||    ||||||||||||| |||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 15446028  T
Q  99 tagaacctt 107  Q
    || ||||||    
T  15446027 taaaacctt 15446019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 22288365 - 22288272
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 97  Q
    ||||||||| ||| ||||||||||  |  ||||||| ||  | | |||||||||||||||||||| || ||||||  |||||||||||||||||    
T  22288365 gagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcgaac 22288272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8757477 - 8757435
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcgg 43  Q
    |||||||||||||||||||| ||||||||| |||||| |||||    
T  8757477 gcggagactaatccctcgagcattgtgggacccaaataggcgg 8757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39950345 - 39950263
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaa 83  Q
    |||||||||||||| ||||| ||||| |||||||||||  ||  ||  ||||||||| | ||||||| |||||||||| ||||    
T  39950345 gcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtccaa 39950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 11767239 - 11767146
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacc 98  Q
    |||||||||| || | ||||||||||  ||||||||||| | || ||  ||||||||||||| | || ||||||||||||| |  |||||||||    
T  11767239 agactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgttgcatgcccaaggatagattcgaacc 11767146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25739220 - 25739155
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 66  Q
    ||||||||||||   |||||| || ||||| |||||||||||| |  |||||||||||||||||||    
T  25739220 gcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaa 25739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 21223465 - 21223553
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 92  Q
    |||||||||  || ||| ||||||||||| |||| ||||  | ||||||||||| | |||||||||| ||||||| | ||| |||||||    
T  21223465 gagactaatttcttgagcattgtgggatctaaataggcgacaagctctccctaaaaattttaacactactgcatgtctaagactgaatt 21223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 54877913 - 54877841
Alignment:
Q  54 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 126  Q
    ||||||||||||||  || || |||||||||||||||||| |||  | ||||||  ||||| |||||||||||    
T  54877913 ctaagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagacc 54877841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 12411279 - 12411139
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    ||||||||||||||| || |||||||||   |||||||||| || |||| ||||||||||||||| |||||||||||||||||||| ||||||||  ||     
T  12411279 ggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagg 12411180  T
Q  103 accttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||  ||||| ||||||||||||||| ||||||||||||    
T  12411179 accttggttaagttagaagagacctgttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 21910337 - 21910195
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||| ||||||||||||| | ||||| |||| || ||||| ||||||||||||||  || |||||||||||||||| ||||||||| |    
T  21910337 gcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcccaaggctggattcgaaccca 21910239  T
Q  101 gaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    | | |||  |||||||||||||||| ||||||||||||||||||    
T  21910238 ggatcttggttaagctagaagagacttgtttcatctcatctaaa 21910195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 31107504 - 31107644
Alignment:
Q  4 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 103  Q
    |||||||||| ||||| ||||||||||  ||||||| ||||| |||||||| |||||||||||| ||| |||||| |||| |||| ||||||||  ||||    
T  31107504 gagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaa 31107603  T
Q  104 ccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||||| ||||| |||||||||||  ||||||||||||||||    
T  31107604 ccttagttaagttagaagagacccatttcatctcatctaaa 31107644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 12836907 - 12837007
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    ||||||||||||||| || ||||||||| ||||||||||||   ||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||    
T  12836907 ggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaacccaga 12837006  T
Q  103 a 103  Q
    |    
T  12837007 a 12837007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 31412253 - 31412114
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 102  Q
    ||||||||||  |||||| ||||||| | |||||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||| || |      
T  31412253 ggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctgcacgcccaaagctgaattcgatcc-atg 31412155  T
Q  103 accttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||| |||| |||  ||||||| ||| ||||||||||||    
T  31412154 accttagttaaactatgagagacccgttccatctcatctaa 31412114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28099376 - 28099251
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaaccta 100  Q
    |||||||||||||||||||| ||| ||| |  ||||||| ||  |   ||||||||| |||||||||||||||||||||||||||||| ||||||||| |    
T  28099376 gcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgcccaaggctggattcgaaccca 28099277  T
Q  101 gaaccttaattaagctagaagagacc 126  Q
    | |||||| ||||| |||||||||||    
T  28099276 ggaccttagttaaggtagaagagacc 28099251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 423782 - 423646
Alignment:
Q  7 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacct 106  Q
    |||||||||||||| |||||||||  ||||||| ||| ||  | || |||||||||||||| |||| ||||||||||||||| |||| |||| | |||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaacct 423683  T
Q  107 taattaagctagaagagacctgtttcatctcatctaa 143  Q
    |  |||| |||||||||| ||||| ||||||||||||    
T  423682 tggttaaactagaagagatctgttccatctcatctaa 423646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 25084121 - 25084017
Alignment:
Q  47 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatg 146  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |  || || ||||||||||||||||| ||| ||||||||||||| ||    
T  25084121 gctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtg 25084022  T
Q  147 ttctt 151  Q
    |||||    
T  25084021 ttctt 25084017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9536900 - 9536844
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaa 57  Q
    |||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  9536900 gcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 21028987 - 21029134
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc------atgcccaaggctgaattcg 94  Q
    |||||||||||||||| |||  |||||| | |||||||||||| |  |||||  ||||||||||||| |||||||      ||||||||||||| |||||    
T  21028987 gcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaacgctgctgcatctgcatgcccaaggctggattcg 21029084  T
Q  95 aacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||| |  |||||  ||||||||||||||||| ||  |||||||| ||||    
T  21029085 aacccaagaccttggttaagctagaagagacccgtgccatctcatataaa 21029134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 278519 - 278382
Alignment:
Q  6 gactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacc 105  Q
    ||||||||||| |||| |||||||| | |||||| ||| |  |||||| ||||||||||||   || ||||||||||| |||| |||| |||  |  |||    
T  278519 gactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagacc 278421  T
Q  106 ttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    ||| ||||||||||||||||  || ||||||||||||||    
T  278420 ttagttaagctagaagagactcgtgtcatctcatctaaa 278382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 5944962 - 5944840
Alignment:
Q  14 cctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaa 113  Q
    ||||||||||||| ||||| |||||||||| |  |||||||||| |||||||||| || | |||| | ||| ||||||||||||  || |||||  ||||    
T  5944962 cctcgagtattgtaggatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaa 5944863  T
Q  114 gctagaagagacctgtttcatct 136  Q
    | || |||||||| || ||||||    
T  5944862 gttaaaagagacccgtatcatct 5944840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 8507135 - 8507194
Alignment:
Q  85 gctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 144  Q
    |||||||||||||| | ||||||||||||||||||||| | | || ||||||||||||||    
T  8507135 gctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaa 8507194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 29185378 - 29185307
Alignment:
Q  49 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaa 120  Q
    |||||||||||||||||||  || |||||| | || |||| ||||||||||||||||||| |||| ||||||    
T  29185378 tctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaa 29185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 17177270 - 17177189
Alignment:
Q  2 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaa 83  Q
    |||||| ||||||||||||||||||| ||||||||| | | | |  || ||| ||||||||||||  |||||||||||||||    
T  17177270 cggagattaatccctcgagtattgtgagatccaaatagacagaaaactttccttaagagttttaaagctgctgcatgcccaa 17177189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21028850 - 21028924
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 77  Q
    |||||||||||||||| |||  |||||| | |||||||||||| |  ||||  |||||||||||||| |||||||||    
T  21028850 gcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcat 21028924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28933271 - 28933179
Alignment:
Q  1 gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 93  Q
    ||||| |||| || |||||| ||||||| | |||||||||||| |  ||||| |||||| |||||||  || |||||| | ||||||||||||    
T  28933271 gcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 167918 - 167846
Alignment:
Q  69 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 143  Q
    |||||||||||||||||||| ||| |||||    ||||| |||||||||||||||||| ||||||||||||||||    
T  167918 ctgctgcatgcccaaggctggatttgaacccg--accttgattaagctagaagagacccgtttcatctcatctaa 167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 27237 - 27296
Alignment:
Q  5 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagtttt 64  Q
    |||||||||||||||| || ||| ||||||||||||||| | ||||||||||||||||||    
T  27237 agactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 32330 - 32417
Alignment:
Q  59 agttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatg 146  Q
    ||||||||| ||||||||| ||||||  || ||||||||| ||||||||  | ||||||||||||||| ||| ||||| |||||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatg 32417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 16065 - 16173
Alignment:
Q  3 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc----atgcccaaggctgaattcgaacc 98  Q
    |||||||||||| ||||| |||||| || |||||||| ||| |  |||||| || || | |||||||||||||    ||||||||||||| |||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 16164  T
Q  99 tagaacctt 107  Q
    || ||||||    
T  16165 taaaacctt 16173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 11052 - 10973
Alignment:
Q  34 aaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaa 113  Q
    |||||||||| |  |||||| |||||||||||||| || |||||||||||   || |||||||||||| |||||| ||||    
T  11052 aaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaacctaggaccttagttaa 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University