View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_17 (Length: 349)

Name: NF2045_low_17
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_17
NF2045_low_17
[»] chr2 (2 HSPs)
chr2 (98-327)||(14651562-14651791)
chr2 (209-250)||(2727166-2727207)
[»] chr3 (5 HSPs)
chr3 (98-327)||(11899184-11899413)
chr3 (101-327)||(26430583-26430809)
chr3 (206-249)||(25177004-25177047)
chr3 (212-267)||(26701696-26701751)
chr3 (206-243)||(39407675-39407712)
[»] chr8 (3 HSPs)
chr8 (98-327)||(23130467-23130696)
chr8 (149-322)||(7838082-7838255)
chr8 (211-315)||(14761969-14762073)
[»] chr4 (5 HSPs)
chr4 (98-305)||(18666944-18667151)
chr4 (101-321)||(53321907-53322127)
chr4 (102-189)||(28390461-28390549)
chr4 (211-277)||(54475409-54475475)
chr4 (206-250)||(4403272-4403316)
[»] chr1 (3 HSPs)
chr1 (98-327)||(20286885-20287105)
chr1 (209-321)||(24530985-24531097)
chr1 (209-311)||(29100840-29100942)
[»] chr7 (1 HSPs)
chr7 (101-327)||(3688096-3688322)
[»] chr5 (1 HSPs)
chr5 (211-322)||(25787290-25787401)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 98 - 327
Target Start/End: Original strand, 14651562 - 14651791
Alignment:
Q  98 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  14651562 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaggaggggctgtatgtcttgcaaactcaccgtttg 14651661  T
Q  198 aaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 297  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14651662 aatttgcaccaatctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 14651761  T
Q  298 ttgaattaaaacagcataagcatggaagcg 327  Q
    ||||||||||||||||||||||||||||||    
T  14651762 ttgaattaaaacagcataagcatggaagcg 14651791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 2727166 - 2727207
Alignment:
Q  209 agctttgccatgaaatccgcacattgatttccttctctaaga 250  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  2727166 agcttagccatgaaatccgcatattggtttccttctctaaga 2727207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 98 - 327
Target Start/End: Complemental strand, 11899413 - 11899184
Alignment:
Q  98 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||| ||||||||||||||||||  ||||||    
T  11899413 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 11899314  T
Q  198 aaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 297  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11899313 aaattgcaccaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc 11899214  T
Q  298 ttgaattaaaacagcataagcatggaagcg 327  Q
    ||||||||||||||||||||||||||||||    
T  11899213 ttgaattaaaacagcataagcatggaagcg 11899184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 26430583 - 26430809
Alignment:
Q  101 gcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttgaaa 200  Q
    |||||||||||||| |||||||||||||||||||| |  | ||||||||||||||| || | | |||| | ||||||||||| ||| || | ||| |||     
T  26430583 gcctaagctctagggaacgcagttcccatggcgtcgagccgtatcaaaggaagaagttcttgaggaggagatgtatgtcttgaaaattctgtgttcgaat 26430682  T
Q  201 ttgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttg 300  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||| || |||||||||||||||||  | || | ||| |||||||||||    
T  26430683 ttgcacctagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgacgagagtatgtcatgaatgtcttg 26430782  T
Q  301 aattaaaacagcataagcatggaagcg 327  Q
     ||||| ||||| |||||||| |||||    
T  26430783 gattaatacagcgtaagcatgaaagcg 26430809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 25177004 - 25177047
Alignment:
Q  206 ccaagctttgccatgaaatccgcacattgatttccttctctaag 249  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  25177004 ccaagctttgccatgaaatccgcacactgattaccttctctaag 25177047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 26701696 - 26701751
Alignment:
Q  212 tttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaa 267  Q
    |||||||||||||| |||||||| ||||||||||| || |||||||| || |||||    
T  26701696 tttgccatgaaatcagcacattggtttccttctctgaggcaatgttggatagagaa 26701751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 39407712 - 39407675
Alignment:
Q  206 ccaagctttgccatgaaatccgcacattgatttccttc 243  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  39407712 ccaagcttggccatgaaatccgcacattgattaccttc 39407675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 98 - 327
Target Start/End: Original strand, 23130467 - 23130696
Alignment:
Q  98 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||| ||||||||||||||||||  ||||||    
T  23130467 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 23130566  T
Q  198 aaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 297  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23130567 aaattgcaccaagcttttccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtcttgaatgtc 23130666  T
Q  298 ttgaattaaaacagcataagcatggaagcg 327  Q
    ||||||||||||||||||||||||||||||    
T  23130667 ttgaattaaaacagcataagcatggaagcg 23130696  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 322
Target Start/End: Original strand, 7838082 - 7838255
Alignment:
Q  149 ggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttgaaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaa 248  Q
    ||||||||||||||| |||| |  ||||| || ||||||||  |  | ||| |||| ||||||||||||||||| || ||||||||| |||||| ||| |    
T  7838082 ggaagaagatcataaggaggagaggtatgcctcgcaaactcttcagtcgaagttgctccaagctttgccatgaagtcagcacattgacttccttatctga 7838181  T
Q  249 gacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttgaattaaaacagcataagcatgg 322  Q
    |  ||   || || ||||||||  ||||| | |||| ||||| ||| ||||| | ||||||| |||||||||||    
T  7838182 ggtaacaatggattgagaagttccttgaggaaagcaggtctttaatatcttggagtaaaacatcataagcatgg 7838255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 14762073 - 14761969
Alignment:
Q  211 ctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttgaattaaaaca 310  Q
    |||||| | |||||| |||||||| || |||||||| |||||||| || |||| ||||||| |||   |||  | |||||  |||||||| |||||||||    
T  14762073 ctttgcaaagaaatctgcacattggttcccttctcttagacaatggtgaatggtgaagtttcttgttgatatgatgtctttgatgtcttggattaaaaca 14761974  T
Q  311 gcata 315  Q
    |||||    
T  14761973 gcata 14761969  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 98 - 305
Target Start/End: Complemental strand, 18667151 - 18666944
Alignment:
Q  98 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||| ||||||||||||||||||  ||||||    
T  18667151 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 18667052  T
Q  198 aaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 297  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  18667051 aaattgcaccaagctttaccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcatgtcttgaatgtc 18666952  T
Q  298 ttgaatta 305  Q
    ||||||||    
T  18666951 ttgaatta 18666944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 101 - 321
Target Start/End: Complemental strand, 53322127 - 53321907
Alignment:
Q  101 gcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttgaaa 200  Q
    |||||||||| ||| ||| |||||||||||||||| | |||||||||||||||||| |||| | |||| | ||||||||||||||||||   ||| ||||    
T  53322127 gcctaagctcgagggaacacagttcccatggcgtcgagtcttatcaaaggaagaagttcatgaggaggagatgtatgtcttgcaaactctatgttcgaaa 53322028  T
Q  201 ttgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttg 300  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| || |||||||||||||||||  | || |||||||||||||||||    
T  53322027 ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgatgagagtaagtcttgaatgtcttg 53321928  T
Q  301 aattaaaacagcataagcatg 321  Q
    ||||| |||||| ||||||||    
T  53321927 aattagaacagcgtaagcatg 53321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 28390461 - 28390549
Alignment:
Q  102 cctaagctctaggaaac-gcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactc 189  Q
    ||||||||||||||||  |||||||||||| |||| ||||| ||||||||||| ||||||||| |||| | ||||||||| ||||||||    
T  28390461 cctaagctctaggaaattgcagttcccatgacgtcgaatctgatcaaaggaaggagatcataaggaggagatgtatgtctcgcaaactc 28390549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 54475409 - 54475475
Alignment:
Q  211 ctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgag 277  Q
    |||||||| ||| || ||||||||||| ||||||||||||||||| || |||||||| ||| |||||    
T  54475409 ctttgccaggaagtcggcacattgattcccttctctaagacaatgatgaatggagaaatttcttgag 54475475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 4403316 - 4403272
Alignment:
Q  206 ccaagctttgccatgaaatccgcacattgatttccttctctaaga 250  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  4403316 ccaagcttggccatgaaatccgcacattgattaccttccctaaga 4403272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 98 - 327
Target Start/End: Complemental strand, 20287105 - 20286885
Alignment:
Q  98 cacgcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||| ||||||||||||||||||  ||||||    
T  20287105 cacgcctaagctctaggaaacgcagttcccatggcgtctaatctaatcaaaggaatgagatcataaggtggggttgtatgtcttgcaaactcttcgtttg 20287006  T
Q  198 aaattgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtc 297  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||           
T  20287005 aaattgcatcaagctttgccatgaaatctgcacattggtttccttctctatgacaatgttgtatggagaagtttgttgataatagcaagtctt------- 20286913  T
Q  298 ttgaattaaaacagcataagcatggaagcg 327  Q
      ||||||||||||||||||||||||||||    
T  20286912 --gaattaaaacagcataagcatggaagcg 20286885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 321
Target Start/End: Complemental strand, 24531097 - 24530985
Alignment:
Q  209 agctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttgaattaaaa 308  Q
    |||||||||||||  || |||||||| || |||||||||| |||||| || ||||||||||||||||   |||  | |||||  || ||||| |||||||    
T  24531097 agctttgccatgaggtcagcacattggttcccttctctaaaacaatgatgaatggagaagtttgttgtcgataaaatgtctttgatatcttggattaaaa 24530998  T
Q  309 cagcataagcatg 321  Q
    |||||||||||||    
T  24530997 cagcataagcatg 24530985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 29100942 - 29100840
Alignment:
Q  209 agctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttgaattaaaa 308  Q
    ||||| |||||||| || ||||||||||| |||||||||| ||||||||| || ||||  | ||| | |  ||| | |||||  ||||||||||||||||    
T  29100942 agcttcgccatgaagtcagcacattgattcccttctctaaaacaatgttgaattgagagatctgtagtggctagaatgtctttgatgtcttgaattaaaa 29100843  T
Q  309 cag 311  Q
    |||    
T  29100842 cag 29100840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 3688096 - 3688322
Alignment:
Q  101 gcctaagctctaggaaacgcagttcccatggcgtctaatcttatcaaaggaagaagatcataaagaggggctgtatgtcttgcaaactcagcgtttgaaa 200  Q
    |||||||||| ||| |||||||||||||||||||| |  ||||||||||||||||| |||| | |||| | ||||||||||| |||||| | ||| |||     
T  3688096 gcctaagctcgagggaacgcagttcccatggcgtcgagccttatcaaaggaagaagttcatgaggaggagatgtatgtcttgtaaactctgtgttcgaat 3688195  T
Q  201 ttgcaccaagctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttg 300  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| || |||||||||||||||||  | || | ||||| |||||||||    
T  3688196 ttgcaccaagctttgccatgaaatcagcacattgattcccttctcgaagacaatgatggatggagaagtttgttgacgagagtatgtctttaatgtcttg 3688295  T
Q  301 aattaaaacagcataagcatggaagcg 327  Q
     ||||||| ||| |||||||| |||||    
T  3688296 gattaaaaaagcgtaagcatgaaagcg 3688322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 25787290 - 25787401
Alignment:
Q  211 ctttgccatgaaatccgcacattgatttccttctctaagacaatgttgtatggagaagtttgttgagaatagcaagtcttgaatgtcttgaattaaaaca 310  Q
    |||||| | |||||| |||||||| || |||||||| | |||||| || |||||||||||| |||   |||  | |||||  ||||||||||||||||||    
T  25787290 ctttgcaaagaaatctgcacattggttcccttctcttaaacaatggtgaatggagaagtttcttgttgatatgatgtctttgatgtcttgaattaaaaca 25787389  T
Q  311 gcataagcatgg 322  Q
    || || ||||||    
T  25787390 gcgtaggcatgg 25787401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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