View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_19 (Length: 334)

Name: NF2045_low_19
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_19
NF2045_low_19
[»] chr5 (11 HSPs)
chr5 (114-319)||(13453735-13453940)
chr5 (162-315)||(13412934-13413087)
chr5 (197-319)||(13419314-13419436)
chr5 (168-319)||(13446836-13446987)
chr5 (162-310)||(13385499-13385647)
chr5 (197-319)||(13426205-13426327)
chr5 (162-314)||(13389316-13389468)
chr5 (194-319)||(13393718-13393843)
chr5 (243-310)||(13373102-13373169)
chr5 (259-315)||(13378914-13378970)
chr5 (57-93)||(13453703-13453739)
[»] chr4 (1 HSPs)
chr4 (162-315)||(47601101-47601254)
[»] chr8 (1 HSPs)
chr8 (246-312)||(28430701-28430767)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 114 - 319
Target Start/End: Original strand, 13453735 - 13453940
Alignment:
Q  114 atttttatagtgaattaaatgaactattgtaccttcatctgattccgatcacgacttattagaaatgagtcggcttttcagttttctattgcttcctttt 213  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||  ||||||| ||||||||||||||||| |||  | ||| ||||| |||||||||||    
T  13453735 atttttatagtgaattaaatgatttattgtaccttcatctgctttggatcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttcctttt 13453834  T
Q  214 cctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13453835 cctttttaggtgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctat 13453934  T
Q  314 attcat 319  Q
    ||||||    
T  13453935 attcat 13453940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 162 - 315
Target Start/End: Original strand, 13412934 - 13413087
Alignment:
Q  162 tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt 261  Q
    |||| |||||| |||||||| || |||  | ||| |||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||| |||    
T  13412934 tcactacttatcagaaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctt 13413033  T
Q  262 tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413034 tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat 13413087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 13419314 - 13419436
Alignment:
Q  197 ttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccacca 296  Q
    |||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  13419314 ttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagccatatggccaagtccacca 13419413  T
Q  297 agaccaacaacacctatattcat 319  Q
    |||||||||||||||||||||||    
T  13419414 agaccaacaacacctatattcat 13419436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 13446836 - 13446987
Alignment:
Q  168 cttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaa 267  Q
    |||| |||||| ||||| |||  | ||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||| ||||    
T  13446836 cttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaa 13446935  T
Q  268 atttcacagccatatggccaagtccaccaagaccaacaacacctatattcat 319  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13446936 atttcacagccatatgaccaagtccaccaagaccaacaactcctatattcat 13446987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 13385647 - 13385499
Alignment:
Q  162 tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt 261  Q
    ||||||||||| |||||||| || |||  | ||| |||| ||||||||||||| ||  |||  ||||||||||||||||||||||||||||| ||| |||    
T  13385647 tcacgacttatcagaaatgaatcagctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctt 13385548  T
Q  262 tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacc 310  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  13385547 tggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacc 13385499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 319
Target Start/End: Original strand, 13426205 - 13426327
Alignment:
Q  197 ttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccacca 296  Q
    |||||| ||||||||||| ||  |||| |||||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||    
T  13426205 ttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagccatatgaccaagtccacca 13426304  T
Q  297 agaccaacaacacctatattcat 319  Q
    ||||||||||| |||||||||||    
T  13426305 agaccaacaacgcctatattcat 13426327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 13389468 - 13389316
Alignment:
Q  162 tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt 261  Q
    ||||||||||| |||||||| ||||||  | ||| |||||||||||| || || || || |||||||||||||| || || ||| | ||||| ||  |||    
T  13389468 tcacgacttatcagaaatgaatcggctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctt 13389369  T
Q  262 tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctata 314  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  13389368 tggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacctata 13389316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 13393843 - 13393718
Alignment:
Q  194 gttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtcca 293  Q
    ||||||||||||||| || || || || ||||||||||||||||| || |||||||| || ||| |||| ||||| |||||| |||  || |||||||||    
T  13393843 gttttctattgcttctttctctttgttgggtgatgtactaattactgttacattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtcca 13393744  T
Q  294 ccaagaccaacaacacctatattcat 319  Q
    ||||||||||||| ||||||||||||    
T  13393743 ccaagaccaacaatacctatattcat 13393718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 13373102 - 13373169
Alignment:
Q  243 acattagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacc 310  Q
    ||||||||||| ||| |||||| |||||||||||||||||| || | ||||||||||||||| |||||    
T  13373102 acattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacc 13373169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 13378914 - 13378970
Alignment:
Q  259 ctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat 315  Q
    ||||||| || |||||||||||||| || | ||||||||||||||| ||||||||||    
T  13378914 ctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacacctatat 13378970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 13453703 - 13453739
Alignment:
Q  57 aacaatcaatttaatttagtgatcgatttgacatttt 93  Q
    |||||||| ||||||||||||||||||||||||||||    
T  13453703 aacaatcattttaatttagtgatcgatttgacatttt 13453739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 315
Target Start/End: Original strand, 47601101 - 47601254
Alignment:
Q  162 tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt 261  Q
    ||||||||||| | ||||||||| |||  | ||  |||| ||||||| ||||| || |||||||||||||||||||| ||||||||||| || ||| |||    
T  47601101 tcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctt 47601200  T
Q  262 tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat 315  Q
    | ||||| || |||||||| || |||||||||||||||||||||||||||||||    
T  47601201 tagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatat 47601254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 28430767 - 28430701
Alignment:
Q  246 ttagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacaccta 312  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  28430767 ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacaccta 28430701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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