View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_2 (Length: 730)
Name: NF2045_low_2
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 13 - 713
Target Start/End: Original strand, 45208859 - 45209562
Alignment:
| Q |
13 |
aatatgaacgaggtcatcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgttgggtggtggcatactacatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45208859 |
aatatgaacgaggtcatcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgtcgggtggtggcatactacatt |
45208958 |
T |
|
| Q |
113 |
catcaccgttgaaataaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45208959 |
catcaccgttgaaataaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttacc |
45209058 |
T |
|
| Q |
213 |
attaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatctgttaagaccagtttttcattagtacatcattga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209059 |
attaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattacagtatcatctgttaagaccagtttttcattagtacatcattga |
45209158 |
T |
|
| Q |
313 |
ttt--atattgataagatagcaaaacctt-gaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaa |
409 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209159 |
tttttatattgataagatagcaaaacctttgaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaa |
45209258 |
T |
|
| Q |
410 |
aatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209259 |
aatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgc |
45209358 |
T |
|
| Q |
510 |
caatactcatagtagttatgcttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggctcaacacctttctctccagggc |
609 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209359 |
caatactcatagtagttatacttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggctcaacacctttctctccagggc |
45209458 |
T |
|
| Q |
610 |
tgttaacaatcgaggccaaattcgatgaattacttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttcagtctttttacaa |
709 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45209459 |
tgttaacaatcgaggccaaattcgatgaattacttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttcagtccctttacaa |
45209558 |
T |
|
| Q |
710 |
tttc |
713 |
Q |
| |
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|||| |
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|
| T |
45209559 |
tttc |
45209562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 355 - 587
Target Start/End: Complemental strand, 5551199 - 5550967
Alignment:
| Q |
355 |
acacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgtt |
454 |
Q |
| |
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|||||||||||||| | || || || |||| || || ||| ||||| ||||||||| ||| |||| || ||||| ||||||||||||||||||| ||| |
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| T |
5551199 |
acacaaacttacttatcgacccgtaaggagttattggttttgagttgaaactgaaaagttgagtcagattgtcaaagtttggatgttgaacaaccaagtt |
5551100 |
T |
|
| Q |
455 |
ccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatc |
554 |
Q |
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||| |||||||||||| | ||||||||||| ||| ||| |||| ||| |||||||||||||| | ||||||| |||||||||||||||||||| || |
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| T |
5551099 |
ccaatctgagtaattcatcctgtaattgaagttagtaacagtaacctttacgcgccaatactccttgtagttaagcttaatgtgccagtgaactcggata |
5551000 |
T |
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| Q |
555 |
ggacacatatgcctagtacattcaactaaaggc |
587 |
Q |
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| T |
5550999 |
ggacacatatgactagtacattgaaccaaaggc |
5550967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 5551792 - 5551688
Alignment:
| Q |
180 |
ctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatct |
279 |
Q |
| |
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|||||| ||||||||||| || ||||| |||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
5551792 |
ctttcggaaaagtagctctgattgtacattaccaataggaccagcttgcatgagtaaatcattgtagaatttaactccccaaagcattgctgtatcatct |
5551693 |
T |
|
| Q |
280 |
gttaa |
284 |
Q |
| |
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||||| |
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| T |
5551692 |
gttaa |
5551688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 389 - 587
Target Start/End: Original strand, 5539650 - 5539848
Alignment:
| Q |
389 |
tgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaatta |
488 |
Q |
| |
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||||||||||||| ||||| ||| ||| |||| || | ||| |||||||| |||||||||| |||||| |||||||||||| | |||||||| |||||| |
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| T |
5539650 |
tgatttgtagttgaaactggaaagttgagtcagattgtaaaagtttggatgctgaacaaccaagttccaatctgagtaattcatcctgtaatttaaatta |
5539749 |
T |
|
| Q |
489 |
aaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatcggacacatatgcctagtacattcaactaaaggc |
587 |
Q |
| |
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|| || | ||| |||||||||||||| | || ||| | ||||||||||||||||||| || ||||||||||| |||||||||| ||| |||||| |
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| T |
5539750 |
gtaatagtgacctttacgcgccaatactccttgtcattaagattaatgtgccagtgaacttggataggacacatatgactagtacattgaaccaaaggc |
5539848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 5539052 - 5539161
Alignment:
| Q |
175 |
ttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtat |
274 |
Q |
| |
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|||| |||||| |||| |||||| | ||||| |||||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||| ||||| | || |
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| T |
5539052 |
ttatcctttcggaaaattagctctaattgtacattaccagtaggaccggcttgcatgagtaaatcattgtaaagtttaactccccaaatcattgttgcat |
5539151 |
T |
|
| Q |
275 |
catctgttaa |
284 |
Q |
| |
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|||||||||| |
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| T |
5539152 |
catctgttaa |
5539161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 696
Target Start/End: Original strand, 5539899 - 5539954
Alignment:
| Q |
641 |
acttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttc |
696 |
Q |
| |
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||||| |||||||||||||| ||||||||| |||||||||||||| |||||||| |
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| T |
5539899 |
acttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttc |
5539954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 586
Target Start/End: Complemental strand, 5008349 - 5008124
Alignment:
| Q |
361 |
acttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtc |
460 |
Q |
| |
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|||||||| || | ||||| ||| |||||| ||||||||| ||||||| | || ||||| || || || |||||||| |||||||||| |||||| || |
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| T |
5008349 |
acttacttattaaaccataaggatttaatgacttgtagttgaaactgaacagctgagtcaaattgtcgaagtttggatgctgaacaaccaagttccaatc |
5008250 |
T |
|
| Q |
461 |
tgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatcggacac |
560 |
Q |
| |
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|| |||||| | | |||||| |||||| || || || |||||| ||||| || || | ||||||| ||||| |||||||| | | || |||||| |
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| T |
5008249 |
ggaataattcatacggtaattaaaattagtaatggaaaccttcacacgccagtattccttgtagttaaccttaacatgccagtggattcggattggacac |
5008150 |
T |
|
| Q |
561 |
atatgcctagtacattcaactaaagg |
586 |
Q |
| |
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||||| |||||||||| ||| ||||| |
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|
| T |
5008149 |
atatgactagtacattgaaccaaagg |
5008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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