View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_21 (Length: 324)
Name: NF2045_low_21
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 22041278 - 22041552
Alignment:
| Q |
15 |
cttcaaatttctctctttctcatgaatccttcccccttcgttttagacttctttacatatggacaataaaatnnnnnnnncttaccaaacaaacttttga |
114 |
Q |
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| T |
22041278 |
cttcaaatttctctctttcccatgaatccttcccccttcgttttagacttctttacatatggacaataaaataaaataaacttaccaaacaaacttttga |
22041377 |
T |
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| Q |
115 |
tattattggttcagcagttgagtttctttctaagtagttgagtttctttctaagttatttt-atcatctacttcgcaatttgattttgaaataatcatgt |
213 |
Q |
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| T |
22041378 |
tattattggttcagcagttg--------------------agtttctttctaagttatttttatcatctacttcgcaatttgattttgaaatagtcatgt |
22041457 |
T |
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| Q |
214 |
tttattattctctgaagctattttacttctgggtgccttttcttttgttcattctttatctcaaaatactaaaaattagtgcttggatattctgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22041458 |
tttattattctctgaagctattttacttctgggtgctttttcttttgttcattctttatctcaaaatactaaaaattagtgcttggatattctgt |
22041552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 147 - 308
Target Start/End: Complemental strand, 2426036 - 2425873
Alignment:
| Q |
147 |
agtagttgagtttctttctaagttatttt-atcatctacttcgcaatttgattttg-aaataatcatgttttattattctctgaagctattttacttctg |
244 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||| || |
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| T |
2426036 |
agtagttgagtttctttctaacttatttttatcatctacttctcaatttcattttggaaataatcatgttttattattctctgaagctattctacttttg |
2425937 |
T |
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| Q |
245 |
ggtgccttttcttttgttcattctttatctcaaaatactaaaaattagtgcttggatattctgt |
308 |
Q |
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| T |
2425936 |
ggtgctttttcttttgtccattctttatctcaaaatactaaaaatttgtgcttggatattctgt |
2425873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 2426148 - 2426035
Alignment:
| Q |
15 |
cttcaaatttctctctttctcatgaatccttcccccttcgttttagacttctttacatatggacaataaaatnnnnnnnncttaccaaacaaacttttga |
114 |
Q |
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||||||||||||||||||| ||| |||| || |||||| |||||||||||||||||||||||| || ||||| | ||||||||||||||||| |
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| T |
2426148 |
cttcaaatttctctctttcccatcaatcttttcccctttgttttagacttctttacatatggataagaaaatccacaaaacccaccaaacaaacttttga |
2426049 |
T |
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| Q |
115 |
tattattggttcag |
128 |
Q |
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|||| ||| ||||| |
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| T |
2426048 |
tattgttgattcag |
2426035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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