View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_22 (Length: 324)

Name: NF2045_low_22
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_22
NF2045_low_22
[»] chr4 (1 HSPs)
chr4 (13-307)||(9157872-9158166)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 9158166 - 9157872
Alignment:
Q  13 aatattttcatcagtacatttgattaaattgctttggttttttggattacagaacatgcttttctttctctaaataatagcataaaatttgatatgtagt 112  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9158166 aatattttcattagtacatttgtttaaattgctttggttttttggattacaaaacatgcttttctttctctaaataatagcataaaatttgatatgtagt 9158067  T
Q  113 ttgtttgcagcttcaagagtaagccattcaacaaatacttcatccgagtcatattatgtgtcttacgccttacgaccatgatatacagatggtagacgag 212  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  9158066 ttgtttgcagcttcaagagtaatccattcaacaaatacttcatccgagtcatattatgtgtcttacgcctcacgaccatgatatacagttgatagacgag 9157967  T
Q  213 tctacagtatgcaacattcgtctctgtccatacgcttcctaatattctacgcatgacaagattcgatcgatcaatacattttcaagagaaatcat 307  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9157966 tctacagtatgcaacattcgtctttgtccatacgcttcctaatattctacgcatgacaagattcgatcgatcaatacattttcaacagaaatcat 9157872  T

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