View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_24 (Length: 282)
Name: NF2045_low_24
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 25916653 - 25916897
Alignment:
| Q |
17 |
ataaactcctatacttccattatatgtaacttccaactagcttaatttctcattaattttacatatatttcaaccaaactttactcttgctaatatgtat |
116 |
Q |
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| T |
25916653 |
ataaactcctatacttccattatatgtaacttccaactagcttaatttctcattaattttacatatatttcaaccacactttactcttgctaat------ |
25916746 |
T |
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| Q |
117 |
aatgaaaggtgaaggaacaataacttattgtaaaaagaaaccggtgaaaactaaaaggtcatgagctaattagctttagtcttctaattacgtacgacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
25916747 |
---gaaaggtgaaggaacaataacttattgtaaaaagaaaccggtgaaaactaaaaggtcatgagctaattagctttagtcttctaattatgtacaacaa |
25916843 |
T |
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| Q |
217 |
caatgaaaggggaaagaataatagattattctaatagaaaatataatatatttt |
270 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
25916844 |
caatgaaaggggaaagaacaatagattattctaatagaaaatataatatttttt |
25916897 |
T |
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Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 2548370 - 2548564
Alignment:
| Q |
17 |
ataaactcctatacttccattata--tgtaacttccaactagcttaatttctcattaattttacatatatttcaaccaaactttactcttgctaatatgt |
114 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |
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| T |
2548370 |
ataaactcctatatttccattatatatgtaacttccaactagcttaatttctcattaattttacatatattccaaccaaactttagtcttgctaatacgt |
2548469 |
T |
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| Q |
115 |
ataatgaaaggtgaaggaacaataacttattgtaaaaagaaaccggtgaaaactaaaaggtcatgagctaattagctttagtcttctaattacgtac |
211 |
Q |
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||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
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| T |
2548470 |
ataatgaaaggtgaaagaataa-aacttattgtaaaaagaaaccggtgaaaactaaaaggtcatgcgctaatt-gctttagtcttctaattatgtac |
2548564 |
T |
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