View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_25 (Length: 282)

Name: NF2045_low_25
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_25
NF2045_low_25
[»] chr5 (12 HSPs)
chr5 (18-157)||(36561238-36561377)
chr5 (18-148)||(12806992-12807122)
chr5 (18-148)||(25773657-25773787)
chr5 (18-157)||(30720631-30720770)
chr5 (18-148)||(37900763-37900893)
chr5 (11-69)||(7277554-7277612)
chr5 (18-77)||(10285196-10285255)
chr5 (8-69)||(25683357-25683418)
chr5 (18-77)||(40886749-40886808)
chr5 (92-146)||(16983268-16983322)
chr5 (106-148)||(15305215-15305257)
chr5 (8-65)||(39070974-39071031)
[»] chr4 (18 HSPs)
chr4 (18-145)||(21661674-21661801)
chr4 (18-145)||(21670438-21670565)
chr4 (8-156)||(22321396-22321544)
chr4 (18-148)||(40122624-40122754)
chr4 (18-148)||(24706386-24706516)
chr4 (18-148)||(25704659-25704789)
chr4 (18-156)||(44568837-44568975)
chr4 (8-148)||(12071569-12071709)
chr4 (9-148)||(21310433-21310571)
chr4 (8-148)||(34324711-34324852)
chr4 (18-148)||(14261052-14261182)
chr4 (18-148)||(50767872-50768002)
chr4 (8-148)||(20249142-20249281)
chr4 (9-63)||(31892327-31892380)
chr4 (19-69)||(20714488-20714538)
chr4 (91-148)||(31892246-31892303)
chr4 (19-59)||(32543577-32543617)
chr4 (19-59)||(51777715-51777755)
[»] chr8 (19 HSPs)
chr8 (18-156)||(7146913-7147051)
chr8 (8-148)||(2540060-2540200)
chr8 (18-157)||(37345570-37345709)
chr8 (18-148)||(11174362-11174492)
chr8 (18-148)||(40058442-40058572)
chr8 (8-147)||(11646453-11646593)
chr8 (21-148)||(3585459-3585586)
chr8 (8-157)||(27034996-27035144)
chr8 (8-148)||(30999652-30999790)
chr8 (18-158)||(43275538-43275676)
chr8 (18-148)||(40918870-40918998)
chr8 (8-76)||(36068160-36068229)
chr8 (107-157)||(40486457-40486507)
chr8 (8-59)||(13881083-13881134)
chr8 (107-157)||(45278705-45278755)
chr8 (107-148)||(8697902-8697943)
chr8 (107-148)||(10646600-10646641)
chr8 (8-65)||(35866705-35866762)
chr8 (107-148)||(41307965-41308006)
[»] chr2 (9 HSPs)
chr2 (18-148)||(1102511-1102641)
chr2 (8-148)||(3518916-3519056)
chr2 (18-148)||(23366797-23366927)
chr2 (18-148)||(39938178-39938308)
chr2 (9-77)||(22388265-22388333)
chr2 (8-148)||(12969868-12970008)
chr2 (29-148)||(37673887-37674006)
chr2 (18-65)||(1646378-1646425)
chr2 (107-148)||(34224382-34224423)
[»] chr6 (18 HSPs)
chr6 (8-148)||(1605587-1605727)
chr6 (18-158)||(8626480-8626620)
chr6 (18-148)||(29260200-29260330)
chr6 (18-148)||(30734622-30734752)
chr6 (8-148)||(13757216-13757356)
chr6 (18-76)||(4129507-4129565)
chr6 (166-233)||(27580415-27580482)
chr6 (8-148)||(15064823-15064963)
chr6 (18-148)||(7761309-7761437)
chr6 (18-69)||(8235711-8235762)
chr6 (18-69)||(17942532-17942583)
chr6 (166-233)||(27316816-27316883)
chr6 (91-148)||(30734820-30734877)
chr6 (8-77)||(31559866-31559934)
chr6 (93-147)||(17942452-17942506)
chr6 (107-162)||(4129429-4129484)
chr6 (91-141)||(8235639-8235689)
chr6 (19-59)||(14287085-14287125)
[»] chr3 (17 HSPs)
chr3 (18-156)||(3383076-3383214)
chr3 (22-148)||(29375146-29375272)
chr3 (18-148)||(13364851-13364981)
chr3 (18-146)||(23088070-23088198)
chr3 (18-157)||(198854-198993)
chr3 (8-147)||(43750146-43750285)
chr3 (18-157)||(46694249-46694388)
chr3 (8-148)||(19241796-19241937)
chr3 (18-159)||(36881279-36881418)
chr3 (91-148)||(27707376-27707433)
chr3 (18-68)||(27707127-27707177)
chr3 (91-148)||(32835168-32835225)
chr3 (24-67)||(37781026-37781069)
chr3 (107-148)||(12094590-12094631)
chr3 (8-65)||(24064315-24064372)
chr3 (28-65)||(44522530-44522567)
chr3 (107-159)||(19911506-19911558)
[»] chr7 (12 HSPs)
chr7 (8-148)||(10981516-10981655)
chr7 (8-156)||(40348960-40349107)
chr7 (18-148)||(27813819-27813949)
chr7 (18-148)||(36453263-36453393)
chr7 (18-69)||(27942178-27942229)
chr7 (9-59)||(3498884-3498934)
chr7 (18-157)||(25614492-25614629)
chr7 (8-145)||(47110462-47110597)
chr7 (19-61)||(37983247-37983289)
chr7 (24-65)||(3091608-3091649)
chr7 (27-65)||(16360473-16360511)
chr7 (107-148)||(25060137-25060178)
[»] chr1 (21 HSPs)
chr1 (18-157)||(23045418-23045557)
chr1 (11-157)||(24772037-24772183)
chr1 (8-157)||(284332-284480)
chr1 (18-159)||(321623-321764)
chr1 (8-156)||(23526240-23526388)
chr1 (18-148)||(40783796-40783926)
chr1 (8-148)||(46771645-46771785)
chr1 (18-148)||(47037991-47038119)
chr1 (18-148)||(27211103-27211233)
chr1 (9-65)||(52037252-52037308)
chr1 (11-69)||(33082832-33082890)
chr1 (8-65)||(1749398-1749454)
chr1 (8-69)||(31003915-31003976)
chr1 (91-142)||(40564242-40564293)
chr1 (107-148)||(3943068-3943109)
chr1 (107-148)||(9588678-9588719)
chr1 (107-148)||(13984995-13985036)
chr1 (8-69)||(18396782-18396843)
chr1 (19-59)||(24876659-24876699)
chr1 (27-59)||(40052596-40052628)
chr1 (31-63)||(40562733-40562765)
[»] scaffold1431 (1 HSPs)
scaffold1431 (18-148)||(38-168)
[»] scaffold1770 (2 HSPs)
scaffold1770 (18-76)||(242-300)
scaffold1770 (107-162)||(164-219)
[»] scaffold0054 (1 HSPs)
scaffold0054 (11-148)||(45462-45599)
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-59)||(65295-65343)
[»] scaffold0062 (1 HSPs)
scaffold0062 (8-65)||(395-451)
[»] scaffold0257 (1 HSPs)
scaffold0257 (107-148)||(23475-23516)
[»] scaffold0056 (1 HSPs)
scaffold0056 (19-67)||(70913-70961)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 36561238 - 36561377
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||||||  ||||||||||    
T  36561238 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattactgcaat 36561337  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    ||||  |||||||| ||||||||||||||||  |||||||    
T  36561338 ttttctaaaatggacatgtattttgaaacggatggagtaa 36561377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 12806992 - 12807122
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  12806992 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaat 12807091  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  12807092 ttctccaaaatggacatgtattttgaaacgg 12807122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 25773787 - 25773657
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             |||||||| |||||| |||| ||||||    
T  25773787 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaat 25773688  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  25773687 ttctccaaaatggacatgtattttgaaacgg 25773657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 30720631 - 30720770
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||| ||| |||| ||||||||| ||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  30720631 aaataaaatgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 30720730  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || | ||||||||| ||||||||||||||||  |||||||    
T  30720731 ttctccaaaatggacatgtattttgaaacggagggagtaa 30720770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37900763 - 37900893
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||| |||  ||||||             ||||||| ||||||| |||||||||||    
T  37900763 aaatagaatgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaat 37900862  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | |||||||||| |||||||||||||||    
T  37900863 ttctccaaaatggatgtgtattttgaaacgg 37900893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 7277554 - 7277612
Alignment:
Q  11 agagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7277554 agagaaaaaatataatgaaataataaatggttaaaggtattatagaaaacacacacata 7277612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 10285196 - 10285255
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatc 77  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  10285196 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatc 10285255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 25683357 - 25683418
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    ||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  25683357 gagagagaaaaaatagaataaaataataaatggttaagggtattatagaaaacacacacata 25683418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 40886749 - 40886808
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatc 77  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||    
T  40886749 aaataaaatgaaataataaatgattaagggtattatagaaaatacacacatattttcatc 40886808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 16983322 - 16983268
Alignment:
Q  92 ttatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaac 146  Q
    |||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||    
T  16983322 ttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaac 16983268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 15305215 - 15305257
Alignment:
Q  106 agttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||||||||||||| | ||||||||| ||||||||||||||||    
T  15305215 agttactgcaatttctccaaaatggacatgtattttgaaacgg 15305257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 39071031 - 39070974
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||  |||| ||||||||||||||||  ||| |||||||||||||| |||||    
T  39071031 gagagagaaataatagaatgaaataataaatgagtaagggtattatagaaaaaacaca 39070974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 21661674 - 21661801
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             ||||||||||||||| |||||||||||    
T  21661674 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggttactgcaat 21661773  T
Q  118 tttttcaaaatggatatgtattttgaaa 145  Q
    || | ||||||||| |||||||||||||    
T  21661774 ttctccaaaatggacatgtattttgaaa 21661801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 21670438 - 21670565
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             ||||||||||||||| |||||||||||    
T  21670438 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggttactgcaat 21670537  T
Q  118 tttttcaaaatggatatgtattttgaaa 145  Q
    || | ||||||||| |||||||||||||    
T  21670538 ttctccaaaatggacatgtattttgaaa 21670565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 22321396 - 22321544
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||              ||||||||||||||| |    
T  22321396 gagagagaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttgg 22321495  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    ||| |||||||| | ||||||||| |||||||||||||||| |||||||    
T  22321496 ttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 40122624 - 40122754
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||             |||||||||||| || |||||||||||    
T  40122624 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggttactgcaat 40122723  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  40122724 ttctccaaaatggacatgtattttgaaacgg 40122754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 24706386 - 24706516
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  24706386 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 24706485  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  24706486 ttctccaaaatggacatgtattttgaaacgg 24706516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 25704789 - 25704659
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  25704789 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 25704690  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  25704689 ttctccaaaatggacatgtattttgaaacgg 25704659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 44568975 - 44568837
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||              |||||||||||| || |||| ||||||    
T  44568975 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggttagtgcaat 44568876  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    || ||||||||||| |||||||||||||||| |||||||    
T  44568875 ttcttcaaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 12071709 - 12071569
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||| |||| || |    
T  12071709 gagagagaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattgg 12071610  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  12071609 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 12071569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 21310571 - 21310433
Alignment:
Q  9 agagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagt 108  Q
    |||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| ||    
T  21310571 agagagaaaaaa-aaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 21310473  T
Q  109 tactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    || |||||||| | ||||||||| ||||||||||||||||    
T  21310472 tagtgcaatttctccaaaatggacatgtattttgaaacgg 21310433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 34324711 - 34324852
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnnttt-atttggtttctta 106  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||| |||| |||||||     
T  34324711 gagagagaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttg 34324810  T
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||| |||||||| | ||||||||| ||||||||||||||||    
T  34324811 gttagtgcaatttctccaaaatggacatgtattttgaaacgg 34324852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 14261182 - 14261052
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||||| || |||             ||||||||||||||| |||| ||||||    
T  14261182 aaataaaatgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggttagtgcaat 14261083  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  14261082 ttctccaaaatggacatgtattttgaaacgg 14261052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 50768002 - 50767872
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| |||| ||||||             |||||||||||||||  ||| ||||||    
T  50768002 aaataaaatgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaat 50767903  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || |  |||||| ||||||||||||||||||    
T  50767902 ttctctaaaatgaatatgtattttgaaacgg 50767872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 20249142 - 20249281
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||||||||  ||| ||             ||||||||||||||| |    
T  20249142 gagagagaaaaaatagaataaaataataaatggttaagggtattatag-aaacacacacataatttcttcaaaaataacaaaatttatttggtttcttgg 20249240  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| | |||||| | ||||||||| ||||||||||||||||    
T  20249241 ttaatacaatttatccaaaatggacatgtattttgaaacgg 20249281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 31892380 - 31892327
Alignment:
Q  9 agagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacaca 63  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  31892380 agagagaa-aaatagaatgaaataataaatggtcaaaggtattatagaaaacaca 31892327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20714488 - 20714538
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatag-aaaacacacacata 69  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  20714488 aatataatgaaataataaatggtt-aaggtattatagaaaaacacacacata 20714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 31892303 - 31892246
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||||||| |||||| ||||||||||||| || |||||| | ||||||||||| ||||    
T  31892303 tttatttgatttcttggttactgcaatttctttaaaatgaacatgtattttgatacgg 31892246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32543617 - 32543577
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    ||||||||||||||||||||| |||| ||||||||| ||||    
T  32543617 aataaaatgaaataataaatgattaagggtattataaaaaa 32543577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 51777755 - 51777715
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    ||||| ||||||||||||||||||||  |||||||||||||    
T  51777755 aataacatgaaataataaatggttaagagtattatagaaaa 51777715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 7147051 - 7146913
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||||             ||||||||||||||| |||||||||||    
T  7147051 aaataaaatgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaat 7146952  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    || ||||||||||| |||||||||||||||| |||||||    
T  7146951 ttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 2540060 - 2540200
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    |||||| || |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |    
T  2540060 gagagaaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 2540159  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  2540160 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 2540200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 37345709 - 37345570
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||              ||||||||||||||| |||  ||||||    
T  37345709 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggttggtgcaat 37345610  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || ||||||||||| ||||||||||||||||  |||||||    
T  37345609 ttcttcaaaatggacatgtattttgaaacggagggagtaa 37345570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 11174362 - 11174492
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  11174362 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 11174461  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||| | ||||||||||||||||    
T  11174462 ttctccaaaatgaacatgtattttgaaacgg 11174492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 40058442 - 40058572
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  40058442 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 40058541  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | | ||||||| ||||||||||||||||    
T  40058542 ttctccgaaatggacatgtattttgaaacgg 40058572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 11646453 - 11646593
Alignment:
Q  8 gagagagaagaaa-taaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttctta 106  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||             |||||||||||||||     
T  11646453 gagagagaaaaaagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttg 11646552  T
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacg 147  Q
    |||| |||||||| | ||||||||| |||||||||||||||    
T  11646553 gttagtgcaatttctccaaaatggacatgtattttgaaacg 11646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 3585586 - 3585459
Alignment:
Q  21 taaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaatttt 120  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||             ||||||||||||||| |||| ||||||||     
T  3585586 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 3585487  T
Q  121 ttcaaaatggatatgtattttgaaacgg 148  Q
    | ||||||||| ||||||||||||||||    
T  3585486 tccaaaatggacatgtattttgaaacgg 3585459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 27035144 - 27034996
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||| |||||  ||||||              |||||||||||||| |    
T  27035144 gagagagaaaaaatagaatgaaataataaatggttaagggtattatagaaa-cacagacataatttcatcaaaaataaaaaaaattatttggtttcttgg 27035046  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    |||||||||||| | ||||||||| ||||||||||||||||  |||||||    
T  27035045 ttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 27034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 30999652 - 30999790
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||||  |||||||||| ||||||             ||||||||||||||| |    
T  30999652 gagagagaaaaaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaatttatttggtttcttgg 30999749  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | |||||| || ||||||||||||||||    
T  30999750 ttagtgcaatttctccaaaattgacatgtattttgaaacgg 30999790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 43275538 - 43275676
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||  |||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  43275538 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 43275635  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaaa 158  Q
    || | ||||||||| ||||||||||||||||  ||||||||    
T  43275636 ttctccaaaatggacatgtattttgaaacggagggagtaaa 43275676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 40918870 - 40918998
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||  |||||||| | |||||              ||||||||||||||| |||| ||||||    
T  40918870 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatgttttcataaaaaataacaaaatttatttggtttcttggttagtgcaat 40918967  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  40918968 ttctccaaaatggacatgtattttgaaacgg 40918998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 36068229 - 36068160
Alignment:
Q  8 gagagagaagaaa-taaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcat 76  Q
    ||||||||| ||| |||||||||||||| |||| |||| |||||||||||||||||||| |||| |||||    
T  36068229 gagagagaaaaaagtaaaatgaaataattaatgattaagggtattatagaaaacacacatatattttcat 36068160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 40486457 - 40486507
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    ||||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  40486457 gttactgcaatttcttcaaaatggacatgtattttgaaacggagggagtaa 40486507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 13881083 - 13881134
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    |||||||||  |||| |||||||||||||||| |||| ||||||||||||||    
T  13881083 gagagagaactaatataatgaaataataaatgattaagggtattatagaaaa 13881134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 45278705 - 45278755
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    ||||||||||||| | ||||||||| ||||||||||||||||  |||||||    
T  45278705 gttactgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 45278755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 8697902 - 8697943
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  8697902 gttactgcaatttctccaaaatggacatgtattttgaaacgg 8697943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 10646641 - 10646600
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  10646641 gttactgcaatttctccaaaatggacatgtattttgaaacgg 10646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 35866762 - 35866705
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||  |||| ||| |||||||||||| |||| |||||||||||||| |||||    
T  35866762 gagagagaaataatagaataaaataataaatgtttaagggtattatagaaaaaacaca 35866705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 41307965 - 41308006
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  41307965 gttactgcaatttctccaaaatggacatgtattttgaaacgg 41308006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 1102641 - 1102511
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||||||||||    
T  1102641 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaat 1102542  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  1102541 ttctccaaaatggacatgtattttgaaacgg 1102511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 3519056 - 3518916
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |    
T  3519056 gagagagaaaaaataaaatgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 3518957  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  3518956 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 3518916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 23366927 - 23366797
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||              ||||||||||||||| |||| ||||||    
T  23366927 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaat 23366828  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  23366827 ttctccaaaatggacatgtattttgaaacgg 23366797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 39938308 - 39938178
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  39938308 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 39938209  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||  ||||||||||||||||    
T  39938208 ttctccaaaatggtcatgtattttgaaacgg 39938178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 22388265 - 22388333
Alignment:
Q  9 agagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatc 77  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  22388265 agagagaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatc 22388333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 12969868 - 12970008
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||||||| | |||||||  ||||||             ||||||||||||||| |    
T  12969868 gagagagaaaaaatagaataaaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttgg 12969967  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  12969968 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 12970008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 37673887 - 37674006
Alignment:
Q  29 aataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaattttttcaaaat 128  Q
    ||||||||||| |||| ||||||||||||||||||||||||| ||||||             |||||||| |||||| |||| |||||||| | ||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaat 37673986  T
Q  129 ggatatgtattttgaaacgg 148  Q
    | | ||||||||||||||||    
T  37673987 gaacatgtattttgaaacgg 37674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 1646425 - 1646378
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  1646425 aaataaaatgaaataataaatgattaagggtattatagaaaacacaca 1646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 34224382 - 34224423
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  34224382 gttactgcaatttctccaaaatggacatgtattttgaaacgg 34224423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 1605727 - 1605587
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |    
T  1605727 gagagagaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 1605628  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  1605627 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 1605587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 8626620 - 8626480
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  8626620 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaat 8626521  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaaa 158  Q
    || ||||||||||| ||||||||||||||||  ||||||||    
T  8626520 ttcttcaaaatggacatgtattttgaaacggagggagtaaa 8626480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 29260330 - 29260200
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  29260330 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 29260231  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  29260230 ttctccaaaatggacatgtattttgaaacgg 29260200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 30734622 - 30734752
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  30734622 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 30734721  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  30734722 ttctccaaaatggacatgtattttgaaacgg 30734752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 13757356 - 13757216
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |    
T  13757356 gagagagaaaaaataaaatgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 13757257  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| || ||||| | ||||||||| ||||||||||||||||    
T  13757256 ttagtgtaatttctccaaaatggacatgtattttgaaacgg 13757216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4129565 - 4129507
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcat 76  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  4129565 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcat 4129507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27580415 - 27580482
Alignment:
Q  166 aaaattaggaaatttataacattacttttagcttccgaaagttttgtctaaataacataataactttt 233  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  27580415 aaaattagaaaattcataacattagttttaacttccgaaagttttgtctaaataacttaataactttt 27580482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 15064823 - 15064963
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||| |||| ||||||||||||||  ||||||             ||||||||||||||| |    
T  15064823 gagagagaaaaaatataatcaaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgg 15064922  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    || ||||||||| |  |||||||| ||||||||||||||||    
T  15064923 ttgctgcaatttctctaaaatggacatgtattttgaaacgg 15064963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 7761437 - 7761309
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||  ||||||| ||||||             ||||||| ||||||| |||| ||||||    
T  7761437 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaat 7761340  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  7761339 ttctccaaaatggacatgtattttgaaacgg 7761309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 8235762 - 8235711
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  8235762 aaatagaatgaaataataaatgattaagggtattatagaaaacacacacata 8235711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 17942583 - 17942532
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  17942583 aaataaaatgaaataataaatggttaagggtattatagagaacacgcacata 17942532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27316816 - 27316883
Alignment:
Q  166 aaaattaggaaatttataacattacttttagcttccgaaagttttgtctaaataacataataactttt 233  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||||||||||||  ||| |||||||||||    
T  27316816 aaaattagaaaattcataacattagttttaacttccgaaagttttgtctaatcaacttaataactttt 27316883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 30734820 - 30734877
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||||||| ||| || ||||||||||||| ||||||||||| ||||||||||||||||    
T  30734820 tttatttgatttttttgttactgcaatttcttcaaaatggacatgtattttgaaacgg 30734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 31559866 - 31559934
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatc 77  Q
    ||||||||| ||| |||||||||||||||||| |||| ||||||| |||||||| |||||||| ||||||    
T  31559866 gagagagaaaaaa-aaaatgaaataataaatgattaagggtattacagaaaacatacacatattttcatc 31559934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 17942506 - 17942452
Alignment:
Q  93 tatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaacg 147  Q
    ||||||||||||| ||||||||||||| |  |||||||| |||||||||||||||    
T  17942506 tatttggtttcttggttactgcaatttctcaaaaatggacatgtattttgaaacg 17942452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 4129484 - 4129429
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaaatcat 162  Q
    ||||||||||||| | |||| |||||||||||||||||||||  ||||||| ||||    
T  4129484 gttactgcaatttctccaaagtggatatgtattttgaaacggagggagtaattcat 4129429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 8235689 - 8235639
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtatttt 141  Q
    ||||||| ||||||| ||||||||||||| ||||||||| | |||||||||    
T  8235689 tttatttcgtttcttggttactgcaatttcttcaaaatgtacatgtatttt 8235639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 14287125 - 14287085
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    ||||||||||||||||||| || ||| ||||||||||||||    
T  14287125 aataaaatgaaataataaaggggtaagggtattatagaaaa 14287085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 3383214 - 3383076
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||||||||||    
T  3383214 aaataaaatgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaat 3383115  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    || | ||||||||| || ||||||||||||| |||||||    
T  3383114 ttctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 29375272 - 29375146
Alignment:
Q  22 aaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaattttt 121  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| ||||||||||||| |    
T  29375272 aaaaagaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttactgcaatttct 29375173  T
Q  122 tcaaaatggatatgtattttgaaacgg 148  Q
     ||||||||| ||||||||||||||||    
T  29375172 ccaaaatggacatgtattttgaaacgg 29375146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 13364981 - 13364851
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  13364981 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 13364882  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||| | ||||||||||||||||    
T  13364881 ttctccaaaatgaacatgtattttgaaacgg 13364851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 23088070 - 23088198
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  23088070 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 23088169  T
Q  118 tttttcaaaatggatatgtattttgaaac 146  Q
    || |||||||| || || |||||||||||    
T  23088170 ttcttcaaaatagacatatattttgaaac 23088198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 198993 - 198854
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||             ||||||||||||||| || | ||||||    
T  198993 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtcagtgcaat 198894  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || | ||||||||| ||||||||||||||||  |||||||    
T  198893 ttctccaaaatggacatgtattttgaaacggagggagtaa 198854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 43750285 - 43750146
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||| |||  ||||||             ||||||||||||||| |    
T  43750285 gagagagaaaaaatagaatgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttgg 43750186  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacg 147  Q
    ||||| |||||| | ||||||||| |||||||||||||||    
T  43750185 ttactccaatttctccaaaatggacatgtattttgaaacg 43750146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 46694249 - 46694388
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             |||||||||||||||  ||| ||||||    
T  46694249 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaat 46694348  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || | ||||| ||| ||||||||||||||||  |||||||    
T  46694349 ttctccaaaaaggacatgtattttgaaacggagggagtaa 46694388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 19241796 - 19241937
Alignment:
Q  8 gagagagaagaaa-taaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttctta 106  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||             |||||||||||||||     
T  19241796 gagagagaaaaaagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttg 19241895  T
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||| ||||||||   ||||||||| ||||||||||||||||    
T  19241896 gttagtgcaatttcaccaaaatggacatgtattttgaaacgg 19241937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 36881418 - 36881279
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||  ||| ||||||             ||||||||||||||| |||| ||||||    
T  36881418 aaataaaatgaaataataaataattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 36881321  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaaat 159  Q
    || | ||||||||| ||||||||||||||||  |||||||||    
T  36881320 ttctccaaaatggacatgtattttgaaacggagggagtaaat 36881279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 27707376 - 27707433
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||||| ||||||||||||| | ||||||||| |||||||| |||||||    
T  27707376 tttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacgg 27707433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 27707127 - 27707177
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacat 68  Q
    |||||||| |||||||||||||||||| | |||||||||||||||| ||||    
T  27707127 aaataaaaagaaataataaatggttaaggatattatagaaaacacatacat 27707177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 32835168 - 32835225
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||||||| |||||| |||| |||||||| | ||||||||| ||||||||||||||||    
T  32835168 tttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgg 32835225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 37781069 - 37781026
Alignment:
Q  24 aatgaaataataaatggttaaaggtattatagaaaacacacaca 67  Q
    |||||||||||||||||||||  ||||||||||||| |||||||    
T  37781069 aatgaaataataaatggttaatagtattatagaaaaaacacaca 37781026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 12094631 - 12094590
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  12094631 gttactgcaatttctccaaaatggacatgtattttgaaacgg 12094590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 24064372 - 24064315
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||  |||| ||| ||||||||||||| ||| |||||||||||||| |||||    
T  24064372 gagagagaaataatagaataaaataataaatgggtaagggtattatagaaaaaacaca 24064315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 44522567 - 44522530
Alignment:
Q  28 aaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  44522567 aaataataaatggttaaaagtattatagaaaaaacaca 44522530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 19911558 - 19911506
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaaat 159  Q
    ||||||||||||| | ||||||| | ||||||||||||||||  |||||||||    
T  19911558 gttactgcaatttctccaaaatgaacatgtattttgaaacggagggagtaaat 19911506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 10981655 - 10981516
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |    
T  10981655 gagagagaa-aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgg 10981557  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||| |||||||| | ||||||||| ||||||||||||||||    
T  10981556 ttagtgcaatttctccaaaatggacatgtattttgaaacgg 10981516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 40349107 - 40348960
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             |||||||| |||||| |    
T  40349107 gagagagaa-aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttgg 40349009  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    ||| |||||||| | ||||||||| |||||||||||||||| |||||||    
T  40349008 ttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 27813949 - 27813819
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||             ||||||||||||||| |||| ||||||    
T  27813949 aaataaaatgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 27813850  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  27813849 ttctccaaaatggacatgtattttgaaacgg 27813819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 36453263 - 36453393
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  36453263 aaataaaatgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggttagtgcaat 36453362  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  36453363 ttctccaaaatggacatgtattttgaaacgg 36453393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 27942178 - 27942229
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  27942178 aaatagaatgaaataataaatggttaaaggtattatagaaaaaacacacata 27942229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3498884 - 3498934
Alignment:
Q  9 agagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  3498884 agagagaaaaaataaaatgaaataataaatggttaaaagtattatagaaaa 3498934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 25614492 - 25614629
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||  ||||||||||||  ||| ||||||             |||||||||||| || |||| ||||||    
T  25614492 aaataaaatgaaataataaatgattaagggtatttcagaaaacacaca--tattttcatcaaaaataacaaaatttatttggttttttggttagtgcaat 25614589  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || | ||||||||| |||||||||||||||| ||||||||    
T  25614590 ttctccaaaatggacatgtattttgaaacggaaggagtaa 25614629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 47110597 - 47110462
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    |||||| || ||||||||| |||||||||||| |||| ||||||||||||||||  ||||||| ||||||             ||||||| ||||||| |    
T  47110597 gagagaaaaaaaataaaataaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttattttgtttcttgg 47110500  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaa 145  Q
    ||| |||||||| | ||||||||| |||||||||||||    
T  47110499 ttagtgcaatttctccaaaatggacatgtattttgaaa 47110462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 37983289 - 37983247
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaaca 61  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  37983289 aatataatgaaataataaatggttaaaggtattataaaaaaca 37983247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 3091649 - 3091608
Alignment:
Q  24 aatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  3091649 aatgaaataataaatggttaagggtattatagaaaaaacaca 3091608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 16360511 - 16360473
Alignment:
Q  27 gaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  16360511 gaaataataaatggttaagggtattatagaaaaaacaca 16360473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 25060137 - 25060178
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  25060137 gttactgcaatttctccaaaatggacatgtattttgaaacgg 25060178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 23045418 - 23045557
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  23045418 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 23045517  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    || | ||||||||| ||||||||||||||||  |||||||    
T  23045518 ttctccaaaatggacatgtattttgaaacggagggagtaa 23045557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 24772037 - 24772183
Alignment:
Q  11 agagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagtta 110  Q
    |||||| ||||| ||| ||||||||||||||||| |||||||||||||| |||||||||  ||||||             ||||||||||||||| ||||    
T  24772037 agagaaaaaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggtta 24772136  T
Q  111 ctgcaattttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
     |||||||| ||||||||||| ||||||||||||||||  |||||||    
T  24772137 gtgcaatttcttcaaaatggacatgtattttgaaacggagggagtaa 24772183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 284480 - 284332
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    ||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||             ||||||||||||||| |    
T  284480 gagagagaa-aagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgg 284382  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaa 157  Q
    ||| |||||||| | ||||||||| ||||||||||||||||  |||||||    
T  284381 ttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtaa 284332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 321764 - 321623
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  321764 aaataaaatgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 321665  T
Q  118 tttttcaaaatggatatgtattttgaaacgggaggagtaaat 159  Q
    || | ||||||| | ||||||||||||||||  |||||||||    
T  321664 ttctccaaaatgaacatgtattttgaaacggagggagtaaat 321623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 23526388 - 23526240
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||             |||||||||||||||      
T  23526388 gagatagaaaaaatagaatgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttga 23526289  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgggaggagta 156  Q
    |||||||||||| | ||||||| | ||||||||||||| || |||||||    
T  23526288 ttactgcaatttctccaaaatgaacatgtattttgaaatggaaggagta 23526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 40783796 - 40783926
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             |||||||| |||||| |||| ||||||    
T  40783796 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaat 40783895  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||| | ||||||||||||||||    
T  40783896 ttctccaaaatgaacatgtattttgaaacgg 40783926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 46771785 - 46771645
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttag 107  Q
    |||||| || ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||             |||||||  |||||| |    
T  46771785 gagagaaaaaaaatagaatgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttgg 46771686  T
Q  108 ttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  46771685 ttactgcaatttctccaaaatggacatgtattttgaaacgg 46771645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 47037991 - 47038119
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||  |||||||||| ||||||             |||||||| ||||||||||| | ||||    
T  47037991 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaatttatttgatttcttagttagtacaat 47038088  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  47038089 ttctccaaaatggacatgtattttgaaacgg 47038119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27211103 - 27211233
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||| |||  ||| ||             ||||||||||||||| |||| ||||||    
T  27211103 aaatagaataaaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaat 27211202  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  27211203 ttctccaaaatggacatgtattttgaaacgg 27211233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 52037252 - 52037308
Alignment:
Q  9 agagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    |||||||| ||||| |||||||||||||||||||||  |||||||||||||||||||    
T  52037252 agagagaaaaaatagaatgaaataataaatggttaagagtattatagaaaacacaca 52037308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 33082890 - 33082832
Alignment:
Q  11 agagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    |||||| ||||| ||| ||||||||||||||||| |||||||||||||| |||||||||    
T  33082890 agagaaaaaatagaataaaataataaatggttaagggtattatagaaaatacacacata 33082832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 1749454 - 1749398
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    ||||||||| ||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  1749454 gagagagaa-aaatagaataaaataataaatggttaatgctattatagaaaacacaca 1749398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 31003915 - 31003976
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    |||||||||  |||| ||| ||||||||||||||||| |||||||||||||| | |||||||    
T  31003915 gagagagaaataatagaattaaataataaatggttaagggtattatagaaaaaatacacata 31003976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 40564242 - 40564293
Alignment:
Q  91 tttatttggtttcttagttactgcaattttttcaaaatggatatgtattttg 142  Q
    ||||||||||||||| |||||||| |||||| ||||||||| || |||||||    
T  40564242 tttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 3943109 - 3943068
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  3943109 gttactgcaatttctccaaaatggacatgtattttgaaacgg 3943068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 9588719 - 9588678
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  9588719 gttactgcaatttctccaaaatggacatgtattttgaaacgg 9588678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 13984995 - 13985036
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  13984995 gttactgcaatttctccaaaatggacatgtattttgaaacgg 13985036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 18396843 - 18396782
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacata 69  Q
    |||||||||  |||| ||||||||||| ||||||||||  ||||||||||||  ||||||||    
T  18396843 gagagagaaataatagaatgaaataatgaatggttaaatatattatagaaaaaccacacata 18396782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 24876699 - 24876659
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    |||| |||||||| ||||||||| |||||||||||||||||    
T  24876699 aatagaatgaaatgataaatggtcaaaggtattatagaaaa 24876659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 40052596 - 40052628
Alignment:
Q  27 gaaataataaatggttaaaggtattatagaaaa 59  Q
    |||||||||||||||||||| ||||||||||||    
T  40052596 gaaataataaatggttaaagctattatagaaaa 40052628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 40562733 - 40562765
Alignment:
Q  31 taataaatggttaaaggtattatagaaaacaca 63  Q
    |||||||||||||| ||||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacaca 40562765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 38 - 168
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagttactgcaat 117  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||             ||||||||||||||| |||| ||||||    
T  38 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 137  T
Q  118 tttttcaaaatggatatgtattttgaaacgg 148  Q
    || | ||||||||| ||||||||||||||||    
T  138 ttctccaaaatggacatgtattttgaaacgg 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 300 - 242
Alignment:
Q  18 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcat 76  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  300 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcat 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 219 - 164
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgggaggagtaaatcat 162  Q
    ||||||||||||| | |||| |||||||||||||||||||||  ||||||| ||||    
T  219 gttactgcaatttctccaaagtggatatgtattttgaaacggagggagtaattcat 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 45599 - 45462
Alignment:
Q  11 agagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatatcttcatcnnnnnnnnnnnnntttatttggtttcttagtta 110  Q
    |||||| ||||| ||| ||||||||||||||||| |||||||||||||| |||||||||  ||||||             ||||||||||||||| |||     
T  45599 agagaaaaaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttg 45500  T
Q  111 ctgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
     |||||||| | ||||||| | ||||||||||||||||    
T  45499 gtgcaatttctccaaaatgaacatgtattttgaaacgg 45462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 65295 - 65343
Alignment:
Q  11 agagaagaaataaaatgaaataataaatggttaaaggtattatagaaaa 59  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  65295 agagaaaaaatagaatgaaataataaatggttaagggtattatagaaaa 65343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 395 - 451
Alignment:
Q  8 gagagagaagaaataaaatgaaataataaatggttaaaggtattatagaaaacacaca 65  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||| ||||||||||    
T  395 gagagagaa-aaatagaatgaaataataaatgattaagggtattataaaaaacacaca 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 23516 - 23475
Alignment:
Q  107 gttactgcaattttttcaaaatggatatgtattttgaaacgg 148  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  23516 gttactgcaatttctccaaaatggacatgtattttgaaacgg 23475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 70961 - 70913
Alignment:
Q  19 aataaaatgaaataataaatggttaaaggtattatagaaaacacacaca 67  Q
    |||| ||||||||||||||||||||| ||| ||| |||||| |||||||    
T  70961 aatagaatgaaataataaatggttaagggtgttacagaaaaaacacaca 70913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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