View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_26 (Length: 253)
Name: NF2045_low_26
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 31356203 - 31356436
Alignment:
| Q |
12 |
aagaatgttagtatatatcttttttgacaagacaagaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttatt |
111 |
Q |
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| T |
31356203 |
aagaatgttagtatatatcttttttgtcaagacaagaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttatt |
31356302 |
T |
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| Q |
112 |
ttcttcattatatgtgcattaa--------caagagaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggatataatg |
203 |
Q |
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| T |
31356303 |
ttcttcattatatgtgcattaacatggaatcaagagaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggatataatg |
31356402 |
T |
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| Q |
204 |
acataatcatgtggtagccaatcattcaatatat |
237 |
Q |
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| T |
31356403 |
acataatcatgtggtagccaatcattcaatatat |
31356436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 31345287 - 31345480
Alignment:
| Q |
12 |
aagaatgttagtatatatcttttttgacaagacaagaatgttatatttgatatcttacactttgttctgaataaaataaaactatatattatcatttatt |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
31345287 |
aagaatgttagtatatatcttttttgtcaagacaagaatgttatatttgatatcttacactttgttttgaataaaatagaaatatatattatcatttatt |
31345386 |
T |
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| Q |
112 |
ttcttcattatatgtgcattaa--------caagagaattgattccgatttgatgtcattcatattctagaaccactttcttatcacaatggat |
197 |
Q |
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| T |
31345387 |
tccttcattatatgtgcattaacatggaatcaagagaattaattctgattttatgtcattcatattctagaaccactttcttatcacaatggat |
31345480 |
T |
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