View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2045_low_3 (Length: 629)

Name: NF2045_low_3
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2045_low_3
NF2045_low_3
[»] chr1 (17 HSPs)
chr1 (19-184)||(23207061-23207226)
chr1 (358-477)||(42475294-42475413)
chr1 (390-470)||(44890076-44890156)
chr1 (390-472)||(51799562-51799644)
chr1 (387-472)||(31068692-31068776)
chr1 (346-419)||(36192184-36192257)
chr1 (388-432)||(27364803-27364847)
chr1 (387-431)||(36099609-36099653)
chr1 (359-469)||(25529085-25529195)
chr1 (348-432)||(23996136-23996220)
chr1 (387-471)||(25393327-25393411)
chr1 (348-423)||(12687171-12687246)
chr1 (355-432)||(29644406-29644482)
chr1 (390-432)||(3927626-3927669)
chr1 (387-432)||(9483859-9483904)
chr1 (348-469)||(23451097-23451217)
chr1 (387-419)||(32642552-32642584)
[»] chr4 (20 HSPs)
chr4 (348-622)||(19845513-19845769)
chr4 (366-496)||(5726127-5726257)
chr4 (369-471)||(20509381-20509483)
chr4 (371-472)||(25131440-25131541)
chr4 (351-432)||(40434110-40434191)
chr4 (364-419)||(10008594-10008649)
chr4 (387-496)||(5760007-5760115)
chr4 (351-475)||(54871822-54871946)
chr4 (387-470)||(296302-296385)
chr4 (387-431)||(9830388-9830432)
chr4 (389-472)||(11772927-11773010)
chr4 (390-432)||(5633865-5633907)
chr4 (381-427)||(13610004-13610050)
chr4 (348-421)||(18920879-18920952)
chr4 (387-432)||(29969581-29969626)
chr4 (389-421)||(7447440-7447472)
chr4 (387-419)||(19837816-19837848)
chr4 (444-496)||(33100962-33101014)
chr4 (387-419)||(38655788-38655820)
chr4 (444-496)||(40155761-40155813)
[»] chr5 (14 HSPs)
chr5 (35-205)||(32263624-32263797)
chr5 (348-432)||(30723559-30723643)
chr5 (351-432)||(8249518-8249599)
chr5 (345-457)||(12832525-12832637)
chr5 (345-457)||(12864500-12864612)
chr5 (348-432)||(22935574-22935658)
chr5 (345-421)||(32019043-32019119)
chr5 (369-463)||(25325117-25325211)
chr5 (348-423)||(7962191-7962266)
chr5 (389-433)||(23878014-23878058)
chr5 (345-431)||(15772769-15772855)
chr5 (346-419)||(3580979-3581052)
chr5 (392-432)||(26659653-26659693)
chr5 (392-432)||(26931244-26931284)
[»] scaffold0233 (1 HSPs)
scaffold0233 (364-472)||(10952-11060)
[»] chr7 (13 HSPs)
chr7 (387-496)||(16559097-16559206)
chr7 (387-496)||(16606456-16606565)
chr7 (348-432)||(38153631-38153715)
chr7 (385-432)||(34236226-34236273)
chr7 (359-432)||(14316452-14316525)
chr7 (345-421)||(27853844-27853920)
chr7 (364-432)||(29375747-29375815)
chr7 (346-432)||(34792063-34792149)
chr7 (349-421)||(37136591-37136663)
chr7 (387-470)||(40681711-40681794)
chr7 (348-421)||(40617783-40617856)
chr7 (391-477)||(10065354-10065440)
chr7 (381-427)||(9627196-9627242)
[»] chr3 (11 HSPs)
chr3 (350-496)||(35502902-35503048)
chr3 (366-496)||(18649897-18650027)
chr3 (345-467)||(45967984-45968106)
chr3 (387-496)||(18689339-18689447)
chr3 (351-419)||(22532982-22533050)
chr3 (390-432)||(25132774-25132816)
chr3 (346-419)||(19652143-19652216)
chr3 (351-419)||(29543447-29543515)
chr3 (351-419)||(42807350-42807418)
chr3 (390-472)||(41367732-41367814)
chr3 (389-430)||(25844735-25844775)
[»] chr6 (11 HSPs)
chr6 (387-496)||(2540558-2540667)
chr6 (389-477)||(34600889-34600977)
chr6 (389-477)||(34627434-34627522)
chr6 (346-419)||(17712981-17713054)
chr6 (387-471)||(12687193-12687277)
chr6 (376-432)||(32197865-32197921)
chr6 (389-477)||(34722166-34722254)
chr6 (348-432)||(10304210-10304290)
chr6 (350-421)||(32534099-32534170)
chr6 (367-424)||(9906145-9906202)
chr6 (387-419)||(33753598-33753630)
[»] chr2 (9 HSPs)
chr2 (359-472)||(21579656-21579769)
chr2 (345-421)||(24738781-24738857)
chr2 (388-432)||(20947114-20947158)
chr2 (389-432)||(16315197-16315240)
chr2 (369-471)||(30504720-30504822)
chr2 (348-421)||(1998752-1998825)
chr2 (389-472)||(12807580-12807663)
chr2 (392-473)||(10289498-10289579)
chr2 (405-475)||(12605885-12605955)
[»] chr8 (7 HSPs)
chr8 (387-432)||(460133-460178)
chr8 (381-472)||(43775253-43775344)
chr8 (387-432)||(16839304-16839349)
chr8 (342-419)||(7180085-7180162)
chr8 (381-461)||(38737424-38737504)
chr8 (366-418)||(41691166-41691218)
chr8 (389-421)||(17858184-17858216)
[»] scaffold0309 (1 HSPs)
scaffold0309 (402-463)||(727-788)
[»] scaffold0094 (1 HSPs)
scaffold0094 (359-432)||(25970-26043)
[»] scaffold0019 (1 HSPs)
scaffold0019 (390-445)||(49091-49146)
[»] scaffold0225 (1 HSPs)
scaffold0225 (379-496)||(5503-5620)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 23207226 - 23207061
Alignment:
Q  19 agacacaattcattccatcatttcatttcacaagtcatgcctcattttgaaccgttaaagaatctcatataatgtattaacacttattatatataccaat 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  23207226 agacacaattgattccatcatttcatttcacaagtcatgcctcattttgaaccgttaaggaatctcatataatgtattaacatttattatatataccaat 23207127  T
Q  119 gaaaaccaactgataaattaaatagttatttgttgtactgtcataataatttagtcgatttgctag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23207126 gaaaaccaactgataaattaaatagttatttgttgtactgtcataataatttagtcgatttgctag 23207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 358 - 477
Target Start/End: Original strand, 42475294 - 42475413
Alignment:
Q  358 tttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtg 457  Q
    |||||||||||||| | ||| ||| ||| ||| |||||||||| |||||||||||||||||||||||||| ||||     ||||||||||||||||||||    
T  42475294 tttggattgattggcagtctatctatcggagtcaggaggttggcggtttgggggtaaggagaattagggactttaatatagctcttttagggaagtggtg 42475393  T
Q  458 ttggcggttgttggtagaga 477  Q
    |||| | |||||||| ||||    
T  42475394 ttggagattgttggtggaga 42475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 44890156 - 44890076
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 470  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||    |||| | |||||||||||||||||||||||||||    
T  44890156 aaggaggttagtgatttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgttggcggttgttg 44890076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 472
Target Start/End: Original strand, 51799562 - 51799644
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    |||||||||||||||||||||||||||||  ||||||||||||    |||  | || ||||||||||||||||||||||||||    
T  51799562 aaggaggttggtggtttgggggtaaggagttttagggagtttaatagtgccttattggggaagtggtgttggcggttgttggt 51799644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 31068692 - 31068776
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    |||||||||||| ||||||||||| ||| ||| |||||||||||||    |||| | |||||||||||||||||||||||||||||    
T  31068692 agtaaggaggttcgtggtttgggg-taatgagtattagggagtttaattttgctttattagggaagtggtgttggcggttgttggt 31068776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 36192184 - 36192257
Alignment:
Q  346 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||   |||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  36192184 ataggaaaattgcttgggttgattggaactctgtttgtatgagtaaggaggttggtggtttgggggtaaggaga 36192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 27364847 - 27364803
Alignment:
Q  388 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  27364847 gtaaggaggttggtggtttaggggtaaggagaattagggagttta 27364803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 36099653 - 36099609
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttt 431  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  36099653 agtaaggaggttggtggtttgggcgtaaggagaattagggagttt 36099609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 469
Target Start/End: Original strand, 25529085 - 25529195
Alignment:
Q  359 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgt 458  Q
    |||| |||||||||||  ||| ||| | |||| ||||||||||||||||||||| | ||||||||| |||||||  | |||| | || ||||| ||||||    
T  25529085 ttgggttgattggaacattgtatgtaggagtatggaggttggtggtttgggggtgatgagaattagagagtttaatgttgctttattggggaactggtgt 25529184  T
Q  459 tggcggttgtt 469  Q
    ||| |||||||    
T  25529185 tggaggttgtt 25529195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 23996136 - 23996220
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||| |||||| |||||||| | ||| | ||||| ||| |||||||||| |||  | ||||||||||||||||||||||||    
T  23996136 aggaaaattatttgggttgattggcagtctatttgtcggagtcaggaggttggaggtcagtgggtaaggagaattagggagttta 23996220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 471
Target Start/End: Complemental strand, 25393411 - 25393327
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttgg 471  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||    |||||| || |||||||  |||||| |||||||||    
T  25393411 agtaaggaggttggtgttttgggggtaaggagaattctggagtttaatattgctctgttggggaagtaatgttggaggttgttgg 25393327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 12687171 - 12687246
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaatta 423  Q
    |||||||| |||||| |||| ||||| ||| | ||||| ||| |||||||||| || |||||||||||||||||||    
T  12687171 aggaaaatcatttgggttgactggaaatctatttgtcggagtcaggaggttggaggattgggggtaaggagaatta 12687246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 29644482 - 29644406
Alignment:
Q  355 taatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||| |||| ||||| ||||| |||   || ||||||||||||||||| ||||| |||||||||||||||||||    
T  29644482 taatttgggttgactggaattctgtttgtttgagaaaggaggttggtggttt-ggggtgaggagaattagggagttta 29644406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 3927669 - 3927626
Alignment:
Q  390 aaggaggttggtggtttgggggt-aaggagaattagggagttta 432  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  3927669 aaggaggttggtggtttgggggtaaaggagatttagggagttta 3927626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 9483859 - 9483904
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||| ||||||||||||| |||||||| ||||||| ||||||||    
T  9483859 agtaagaaggttggtggtttaggggtaagaagaattatggagttta 9483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 469
Target Start/End: Original strand, 23451097 - 23451217
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttag 447  Q
    |||||||||| ||||||||||||| | | | | ||||  ||| |||||||| | ||| ||||||| |||||||||||||| ||||    |||| | ||||    
T  23451097 aggaaaataacttggattgattggcaatttatttgtctgagtcaggaggtt-gaggtctgggggttaggagaattagggattttaattttgctgtattag 23451195  T
Q  448 ggaagtggtgttggcggttgtt 469  Q
    |||||||||| ||| |||||||    
T  23451196 ggaagtggtgctggaggttgtt 23451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 32642584 - 32642552
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||||||||| |||||||||||||||    
T  32642584 agtaaggaggttggtggcttgggggtaaggaga 32642552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 348 - 622
Target Start/End: Original strand, 19845513 - 19845769
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttag 447  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||    
T  19845513 aggaaaataacttggattgattagaactctatctctcgtagtaaggaggttggtgatttgagggtaaggagaattagggagtttaactatgctcttttag 19845612  T
Q  448 ggaagtggtgttggcggttgttggtagagatggacattttttggtttagagtcgtggtgtcccggtatggtgtagtgggaagccggttggtggagggagg 547  Q
    | ||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||| |  | |||||||||||                  ||||||    
T  19845613 gtaagtggtgttggcggttgttggtggagagggatagtttttggtttagagtcgtggtggcgtgatatggtgtagt------------------gggagg 19845694  T
Q  548 ccgaaatgcctctacgtggtggcgggatatttctgccttgcgtggagagaagtggtttagcattcatctcagtcg 622  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||  |||| |||||||    
T  19845695 ccgaaatgcctctacgtggtggcgggacatttctaccttgcgtggagaggagtgatttagcggtcatatcagtcg 19845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 366 - 496
Target Start/End: Original strand, 5726127 - 5726257
Alignment:
Q  366 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggt 465  Q
    ||||||||| |||| ||  | ||||||||||||||||||||| ||||| ||||||||| ||||||||    || |||| || |||| |||||||||||||    
T  5726127 gattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggt 5726226  T
Q  466 tgttggtagagatggacattttttggtttag 496  Q
    ||||||| |||| ||| | ||| ||||||||    
T  5726227 tgttggtggagaaggagagtttatggtttag 5726257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 20509381 - 20509483
Alignment:
Q  369 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgt 468  Q
    |||||| |||| ||| | ||||||||||||||||| |||||||||||||| ||||| |||||||     |||||||||||||||||||||||| || |||    
T  20509381 tggaacactgtttgtaggagtaaggaggttggtgggttgggggtaaggagtattagagagtttaatatagctcttttagggaagtggtgttggaggatgt 20509480  T
Q  469 tgg 471  Q
    |||    
T  20509481 tgg 20509483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 25131541 - 25131440
Alignment:
Q  371 gaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 470  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||||||| | ||||  | ||||   |||||||||||  |||||||||| |||    
T  25131541 gaactcagtttgtagtagtaaggaggttggtggtttgggggtaaggagaattaggaaatttaatgttgcttcattagggaagtgtcgttggcggttattg 25131442  T
Q  471 gt 472  Q
    ||    
T  25131441 gt 25131440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 40434110 - 40434191
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||| |||| |||||||||| | ||| |||   ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40434110 aaaataacttgggttgattggaattatgtgtgtttgagtaaggaggttggtggtttgagggtaaggagaattagggagttta 40434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 10008594 - 10008649
Alignment:
Q  364 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  10008594 ttgattggaactctgtttgtatgagtaaggaggttggtggtttgggggtaaggaga 10008649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 5760007 - 5760115
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 486  Q
    ||||||||||||||||||||| || || ||||||||| ||||||||    || |||| || |||| |||||||||||||||||||| |||| ||| | ||    
T  5760007 agtaaggaggttggtggtttgcgg-tacggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggttgttggtggagaaggagagtt 5760105  T
Q  487 tttggtttag 496  Q
    | ||||||||    
T  5760106 tatggtttag 5760115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 475
Target Start/End: Complemental strand, 54871946 - 54871822
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttaggga 450  Q
    ||||| |||||| | || ||||| ||||| ||||| ||| |||||||||| ||||||||||| |||||||| |  |||||||     ||  | |||||||    
T  54871946 aaaattatttgggtagactggaaatctgtttgtcggagtcaggaggttggaggtttgggggttaggagaataaaagagtttaatttagcattgttaggga 54871847  T
Q  451 agtggtgttggcggttgttggtaga 475  Q
    |||||||||||||| ||||||||||    
T  54871846 agtggtgttggcgggtgttggtaga 54871822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 470
Target Start/End: Original strand, 296302 - 296385
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 470  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||   ||||  | ||||| |||||||||||| | ||||||    
T  296302 agtaaggaggttggtagtttgggggtaaggagaagtagggagattaataatgcgttgttaggtaagtggtgttggagattgttg 296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 9830388 - 9830432
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttt 431  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  9830388 agtaaggaggttggcggtttaggggtaaggataattagggagttt 9830432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 472
Target Start/End: Original strand, 11772927 - 11773010
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    ||||||||||||   ||||||||||| ||||||||||||||||| |   || || || || |||||||||||| ||||||||||    
T  11772927 taaggaggttggcaatttgggggtaaagagaattagggagtttaacttggcactattgggtaagtggtgttggaggttgttggt 11773010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 5633865 - 5633907
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||    
T  5633865 aaggaggttggaggtttggaggtaaggagaattagtgagttta 5633907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 13610050 - 13610004
Alignment:
Q  381 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattaggga 427  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  13610050 tgtcgaagtcaggaggttggcggtttggggctaaggagaattaggga 13610004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 18920879 - 18920952
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||||| |||||| || ||| | | ||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  18920879 aggaaaattatttgggtttatttgcaatctatttgtcggagtcaggaggttggaggtttgggggtaaggagaat 18920952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 29969581 - 29969626
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||| ||||||||||||||| |||||||||| ||||||| |||||    
T  29969581 agtaaagaggttggtggtttgagggtaaggagtattagggtgttta 29969626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 7447472 - 7447440
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||||||||||||||||||||| ||||||||    
T  7447472 taaggaggttggtggtttgggggttaggagaat 7447440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 19837848 - 19837816
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||| |||||||||||||||||||||||||    
T  19837848 agtaagggggttggtggtttgggggtaaggaga 19837816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 33100962 - 33101014
Alignment:
Q  444 ttagggaagtggtgttggcggttgttggtagagatggacattttttggtttag 496  Q
    ||||||||||||||||||||| ||||||| |||| ||| | ||| ||||||||    
T  33100962 ttagggaagtggtgttggcgggtgttggtggagaaggagagtttgtggtttag 33101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 38655820 - 38655788
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||||||| |||||||||||||||||    
T  38655820 agtaaggaggttggttgtttgggggtaaggaga 38655788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 496
Target Start/End: Complemental strand, 40155813 - 40155761
Alignment:
Q  444 ttagggaagtggtgttggcggttgttggtagagatggacattttttggtttag 496  Q
    |||||||||| |||||||||||||||||| || ||||| | ||| ||||||||    
T  40155813 ttagggaagtagtgttggcggttgttggtggatatggatagtttgtggtttag 40155761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 32263624 - 32263797
Alignment:
Q  35 atcatttcatttcacaagtcatgcctcattttgaaccgttaaagaatctcatataa---tgtattaacacttattatatataccaatgaaaaccaactga 131  Q
    |||||||||||||||||||||||||| | ||||||||||| |  ||||||||||||   ||| |||||||||||| ||||||||||||||||||||| ||    
T  32263624 atcatttcatttcacaagtcatgcctaagtttgaaccgttgagaaatctcatataatattgtgttaacacttattctatataccaatgaaaaccaaccga 32263723  T
Q  132 taaattaaatagttatttgttgtactgtcataataatttagtcgatttgctaggatcacatgtataactaagtc 205  Q
    | ||  || ||||| ||||||||||  |||||||| ||||    || || ||||||||||||||| ||||||||    
T  32263724 tgaagaaattagttctttgttgtaccatcataatattttatgatatatgttaggatcacatgtatgactaagtc 32263797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 30723643 - 30723559
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||  |||| | ||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30723643 aggaaaatatcttgggtggattggaacactatttgtcgtggtaaggaggttggtggtttgggggtaaggagaattagggagttta 30723559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 8249599 - 8249518
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||| |||| |||||||||| | ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  8249599 aaaataacttgggttgattggaattatgtgtgtttgagtaaggaggttggtggtttgggggtaaggagaattagggagttta 8249518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 457
Target Start/End: Complemental strand, 12832637 - 12832525
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 444  Q
    ||||||||||||  |||| | || |||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||||     |||||||    
T  12832637 cataggaaaatatcttgggtggactggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagtattagagagtttaatatcgctcttt 12832538  T
Q  445 tagggaagtggtg 457  Q
    |||||||||||||    
T  12832537 tagggaagtggtg 12832525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 457
Target Start/End: Complemental strand, 12864612 - 12864500
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 444  Q
    ||||||||||||  |||| | || |||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||||     |||||||    
T  12864612 cataggaaaatatcttgggtggactggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagtattagagagtttaatatcgctcttt 12864513  T
Q  445 tagggaagtggtg 457  Q
    |||||||||||||    
T  12864512 tagggaagtggtg 12864500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 22935574 - 22935658
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||| |||||||||||||| | ||| | ||||| ||| |||||||||| |||||||||||||||||||||||||| ||||    
T  22935574 aggaaaatattttggattgattggcaatctatttgtcggagtcaggaggttggcggtttgggggtaaggagaattagggatttta 22935658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 32019119 - 32019043
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    ||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  32019119 catagaaaaattatttgggttgattggaattctgtttgtcggagtcaggaggttggtggcttgggggtaaggagaat 32019043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 369 - 463
Target Start/End: Original strand, 25325117 - 25325211
Alignment:
Q  369 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 463  Q
    ||||| ||||||||  | ||||||||||||||||| ||||||||||||||||||||||| ||||     ||| | ||||||||||||||||||||    
T  25325117 tggaattctgtctgcaggagtaaggaggttggtggattgggggtaaggagaattagggaatttaatttagctttattagggaagtggtgttggcg 25325211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 7962266 - 7962191
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaatta 423  Q
    |||||||| |||||| |||||||||| ||||| ||||| ||| |||| ||||| ||||||||||| ||||||||||    
T  7962266 aggaaaattatttgggttgattggaattctgtttgtcggagtcaggaagttggaggtttgggggttaggagaatta 7962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 23878014 - 23878058
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttag 433  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  23878014 taaggtggttggtggtttgggggtaaggtgaattagggagtttag 23878058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 431
Target Start/End: Original strand, 15772769 - 15772855
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttt 431  Q
    |||||||||||  ||||| |||||||||||| ||| |||   || || |||||||| ||||||||||| || |||||||||||||||    
T  15772769 cataggaaaatcttttgggttgattggaactatgtttgtttgagaaaagaggttggaggtttgggggtcagcagaattagggagttt 15772855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 3580979 - 3581052
Alignment:
Q  346 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||   |||| |||| ||||||||||| |||   ||||||||||||||| |||||||||||||||||    
T  3580979 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaggttggtagtttgggggtaaggaga 3581052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 26659693 - 26659653
Alignment:
Q  392 ggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  26659693 ggaggttggtggtttgggggtaagaagtattagagagttta 26659653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 26931284 - 26931244
Alignment:
Q  392 ggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  26931284 ggaggttggtggtttgggggtaagaagtattagagagttta 26931244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 10952 - 11060
Alignment:
Q  364 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 463  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||||| ||| |    |||| | ||||||||||||||||||||    
T  10952 ttgattggaacactgtctgtcggagtaaggaggttggtggtttgggtgttaggagaattagggtgttcaatattgctttattagggaagtggtgttggcg 11051  T
Q  464 gttgttggt 472  Q
    |||||||||    
T  11052 gttgttggt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 16559097 - 16559206
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 486  Q
    |||||||||||||||||||||||||||||||||||||| || ||||   ||||||| ||||| |||||||||||| ||||||||||||| | ||| | ||    
T  16559097 agtaaggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtt 16559196  T
Q  487 tttggtttag 496  Q
    | ||||||||    
T  16559197 tgtggtttag 16559206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 496
Target Start/End: Complemental strand, 16606565 - 16606456
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 486  Q
    |||||||||||||||||||||||||||||||||||||| || ||||   ||||||| ||||| |||||||||||| ||||||||||||| | ||| | ||    
T  16606565 agtaaggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtt 16606466  T
Q  487 tttggtttag 496  Q
    | ||||||||    
T  16606465 tgtggtttag 16606456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 38153631 - 38153715
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||  |||| | ||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  38153631 aggaaaatagcttgggtggattggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagaattagtgagttta 38153715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 432
Target Start/End: Original strand, 34236226 - 34236273
Alignment:
Q  385 gtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34236226 gtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 34236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 14316525 - 14316452
Alignment:
Q  359 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||| |||||| ||| |||||||||   |||||||||||||||||||||||||||||||||||||| |||||||    
T  14316525 ttgggttgattagaattctgtctgtttgagtaaggaggttggtggtttgggggtaaggagaattagagagttta 14316452  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 27853844 - 27853920
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    ||||||||||| || ||| |||||||||| ||||| ||||| ||| |||||||||||||||||| ||||||||||||    
T  27853844 cataggaaaattatatgggttgattggaattctgtttgtcggagtcaggaggttggtggtttggaggtaaggagaat 27853920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 29375815 - 29375747
Alignment:
Q  364 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||| |||  |||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  29375815 ttgattggaaatctagctgtaggagtaaggaggttggaggtttgggggtaaggagaattagggagttta 29375747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 34792063 - 34792149
Alignment:
Q  346 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||| | ||||||||||||| | |||||||||   |  | ||||||||||||||||||||||||||||||||| |||||||    
T  34792063 ataggaaaattacttggattgattgggagtctgtctgtttgaacagggaggttggtggtttgggggtaaggagaattagagagttta 34792149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 37136591 - 37136663
Alignment:
Q  349 ggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    ||||||| |||||| |||| || || ||| | ||||||||| |||||||||||||||||||||||||||||||    
T  37136591 ggaaaattatttgggttgactgaaaatctatatgtcgtagtcaggaggttggtggtttgggggtaaggagaat 37136663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 470
Target Start/End: Original strand, 40681711 - 40681794
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 470  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    |||  | ||||||||||||||||||| |||||||    
T  40681711 agtaaggaggttggtggttatggggtgaggagaattagggagtttaatagtgcattattagggaagtggtgttggcagttgttg 40681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 40617856 - 40617783
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||||| |||||| |||||||||| | ||| ||||| ||| |||||||||| |||||| |||||||||||||    
T  40617856 aggaaaattatttgggttgattggaattttgtttgtcggagtcaggaggttggaggtttgagggtaaggagaat 40617783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 10065440 - 10065354
Alignment:
Q  391 aggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 477  Q
    ||||||||||  |||||||||||||||||||||| || ||||     ||||||| |||||||||||||||| | |||||||| ||||    
T  10065440 aggaggttggcagtttgggggtaaggagaattagtgactttaatatagctctttcagggaagtggtgttggagattgttggtggaga 10065354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 9627196 - 9627242
Alignment:
Q  381 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattaggga 427  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  9627196 tgtcgaagtcaggaggttggcggtttggggctaaggagaattaggga 9627242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 350 - 496
Target Start/End: Original strand, 35502902 - 35503048
Alignment:
Q  350 gaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttaggg 449  Q
    |||||||  |||| |||| ||||| ||||| ||| | || ||||||||||| ||| |||||||||||||||||||||||||||    |||| | || |||    
T  35502902 gaaaatatcttgggttgactggaattctgtttgtgggaggaaggaggttggcggtctgggggtaaggagaattagggagtttaatagtgctttgtttggg 35503001  T
Q  450 aagtggtgttggcggttgttggtagagatggacattttttggtttag 496  Q
    ||||||||||||||||||||| | |||| ||| | ||| ||||||||    
T  35503002 aagtggtgttggcggttgttgatggagaaggagagtttgtggtttag 35503048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 366 - 496
Target Start/End: Original strand, 18649897 - 18650027
Alignment:
Q  366 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggt 465  Q
    ||||||||| |||| ||  | ||||||||||||||||||||| ||||| ||||||||| ||||||||    || |||| || |||| |||||||||||||    
T  18649897 gattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggt 18649996  T
Q  466 tgttggtagagatggacattttttggtttag 496  Q
    ||||||| |||| ||| | ||| ||||||||    
T  18649997 tgttggtggagaaggagagtttatggtttag 18650027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 467
Target Start/End: Complemental strand, 45968106 - 45967984
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 444  Q
    ||||| ||||| |||||| |||| ||| | ||| | ||||| ||| ||||||||||| |||||||| ||||||||||||||||||||| |  |||| | |    
T  45968106 catagaaaaatcatttgggttgactggcagtctatttgtcggagtcaggaggttggtagtttggggataaggagaattagggagtttaacattgctttat 45968007  T
Q  445 tagggaagtggtgttggcggttg 467  Q
    || |||||||||||||| |||||    
T  45968006 taaggaagtggtgttggaggttg 45967984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 18689339 - 18689447
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 486  Q
    ||||||||||||||||||||| || || ||||||||| ||||||||    || |||| || |||| |||||||||||||||||||| |||| ||| | ||    
T  18689339 agtaaggaggttggtggtttgcgg-tacggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggttgttggtggagaaggagagtt 18689437  T
Q  487 tttggtttag 496  Q
    | ||||||||    
T  18689438 tatggtttag 18689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 22532982 - 22533050
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||| |||||| |||| ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||    
T  22532982 aaaatcatttgggttgactggaaatctgtttgtcggagtaaggaggttggaggtctgggggtaaggaga 22533050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 25132816 - 25132774
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  25132816 aaggaggttggtggtttggggctaaggagaattagagagttta 25132774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 19652143 - 19652216
Alignment:
Q  346 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||   |||| |||| ||||||||||| |||   |||||||| ||||||||||||||||||||||||    
T  19652143 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaagttggtggtttgggggtaaggaga 19652216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 29543515 - 29543447
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||| |||||| |||||||||| ||||| ||||  ||| |||||||||| ||| ||||||||||||||    
T  29543515 aaaatcatttgggttgattggaaatctgtttgtcagagtcaggaggttggaggtctgggggtaaggaga 29543447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 42807418 - 42807350
Alignment:
Q  351 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||| |||||| |||| ||||| ||||| ||||| ||| |||||||||| ||| ||||||||||||||    
T  42807418 aaaatcatttgggttgactggaaatctgtttgtcggagtcaggaggttggaggtctgggggtaaggaga 42807350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 472
Target Start/End: Original strand, 41367732 - 41367814
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| |  | |||| | || || |||||||||| | ||||||||||    
T  41367732 aaggaggttggtggtttgggggtaaagaggatttgggagttcaatgttgctttgttgggtaagtggtgttagaggttgttggt 41367814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 25844735 - 25844775
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtt 430  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  25844735 taaggaggttggtggttt-ggggtaatgagaattagggagtt 25844775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 387 - 496
Target Start/End: Complemental strand, 2540667 - 2540558
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 486  Q
    |||||||||||||||||||||||| ||||||||||||| || ||||   ||||||| ||||| |||||||||||| |||||||| |||| | ||| | ||    
T  2540667 agtaaggaggttggtggtttggggataaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttgatagataaggatagtt 2540568  T
Q  487 tttggtttag 496  Q
    | ||||||||    
T  2540567 tgtggtttag 2540558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 34600977 - 34600889
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 477  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34600977 taaggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34600889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 34627522 - 34627434
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 477  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34627522 taaggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34627434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 17712981 - 17713054
Alignment:
Q  346 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||||||||   |||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  17712981 ataggaaaattgcttgggttgattggaactctgtttgtttaagtaaggaggttggtggtttgggggtaaggaga 17713054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 12687193 - 12687277
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttgg 471  Q
    |||||||||||||||||||||||||||||||| |||||||| || |     ||| | ||||||||||||||||||||| ||||||    
T  12687193 agtaaggaggttggtggtttgggggtaaggagtattagggaattcaatttagctttgttagggaagtggtgttggcggatgttgg 12687277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 32197921 - 32197865
Alignment:
Q  376 ctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||    
T  32197921 ctgtctgtcggggtaaggaggttggcggtttgggggttaggagaattagggagttta 32197865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 34722254 - 34722166
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 477  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34722254 taaggaggttactggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34722166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 10304290 - 10304210
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||| |||| |||||||||||||||| |||     | | |||||||||||||||||||||||||||||||| |||||||    
T  10304290 aggaaaataacttgggttgattggaactctgtttgtt----tgaagaggttggtggtttgggggtaaggagaattagagagttta 10304210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 32534170 - 32534099
Alignment:
Q  350 gaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||| |||||| |||||||||| | ||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  32534170 gaaaattatttgggttgattggaattatgtttgtcgaagtcaggaggttggaggtttgggggtaaggagaat 32534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 9906145 - 9906202
Alignment:
Q  367 attggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattag 424  Q
    ||||||| ||||||||  | ||||||||||||| ||||||||| ||||||||||||||    
T  9906145 attggaattctgtctgcaggagtaaggaggttgatggtttgggagtaaggagaattag 9906202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 33753598 - 33753630
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggaga 419  Q
    |||||||||| ||||||||||||||||||||||    
T  33753598 agtaaggaggctggtggtttgggggtaaggaga 33753630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 472
Target Start/End: Complemental strand, 21579769 - 21579656
Alignment:
Q  359 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgt 458  Q
    |||| |||||||| | ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||||||    |||| | |||||||||||||||    
T  21579769 ttgggttgattggcattctgtttgtcggagtcagaaggttggtggtttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgt 21579670  T
Q  459 tggcggttgttggt 472  Q
    ||| ||||| ||||    
T  21579669 tggaggttgctggt 21579656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 24738781 - 24738857
Alignment:
Q  345 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    ||||||||||| || ||| |||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  24738781 cataggaaaattatatgggttgattggaattctgtttgtcggagtcaggaggttggtggtttgggggtaaggagaat 24738857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 20947114 - 20947158
Alignment:
Q  388 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20947114 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 20947158  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 16315197 - 16315240
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  16315197 taaggaggttggtggtttgggggtaaggagaattagggaattta 16315240  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 30504720 - 30504822
Alignment:
Q  369 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgt 468  Q
    ||||||||||| ||  | ||| ||| | ||||||||||||||||| ||||||||||||||||||    |||||| |||||||||| ||||||||  ||||    
T  30504720 tggaactctgtttgcaggagttaggggcttggtggtttgggggtacggagaattagggagtttaatattgctctgttagggaagtagtgttggcatttgt 30504819  T
Q  469 tgg 471  Q
    |||    
T  30504820 tgg 30504822  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 1998825 - 1998752
Alignment:
Q  348 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||||| |||||| |||||||| | ||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  1998825 aggaaaattatttgggttgattggcaatctatttgtcggagtcaggaggttggaggtttgggggtaaggagaat 1998752  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 472
Target Start/End: Original strand, 12807580 - 12807663
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    |||||||||||||||||| ||||| | |||||||||||||||||      |||| |||||||||||||||||| | ||||||||    
T  12807580 taaggaggttggtggtttaggggttatgagaattagggagtttaatttatctctgttagggaagtggtgttggagattgttggt 12807663  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 10289498 - 10289579
Alignment:
Q  392 ggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggta 473  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |    || | ||||| |||||||||||| || ||||||||    
T  10289498 ggaggttggtggtttgggggtcaggagaattagagagtttaacttgtctttgttaggtaagtggtgttggaggatgttggta 10289579  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 12605885 - 12605955
Alignment:
Q  405 ttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtaga 475  Q
    |||| ||||||||||||||| || ||||  | |||| | |||||||||||||||||| |||||||| ||||    
T  12605885 ttggcggtaaggagaattagagattttaatgttgctttattagggaagtggtgttggaggttgttgataga 12605955  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 432
Target Start/End: Complemental strand, 460178 - 460133
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  460178 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 460133  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 43775253 - 43775344
Alignment:
Q  381 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 472  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| ||||    |||||| ||||||||||| || ||| | ||||||||    
T  43775253 tgtcgtagtcaggaggttggcggtttgggggtaaggagaattagggactttaatattgctctgttagggaagtgatgctggagattgttggt 43775344  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 16839304 - 16839349
Alignment:
Q  387 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  16839304 agtaaggaggttggtggtttgggggtaaggagaattagagagttta 16839349  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 7180162 - 7180085
Alignment:
Q  342 gatcataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 419  Q
    ||||| || ||||| |||| | |||||||||| ||||| ||||| ||| |||||||| | ||||||||||||||||||    
T  7180162 gatcacagaaaaattatttaggttgattggaaatctgtttgtcggagtcaggaggtttgaggtttgggggtaaggaga 7180085  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 461
Target Start/End: Original strand, 38737424 - 38737504
Alignment:
Q  381 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttgg 461  Q
    ||||| ||| |||||||||| ||||||||||| ||||||||||| || ||||     ||||| ||||||||||||||||||    
T  38737424 tgtcggagtcaggaggttggaggtttgggggttaggagaattagagattttaatttagctctattagggaagtggtgttgg 38737504  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 41691166 - 41691218
Alignment:
Q  366 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggag 418  Q
    |||||||||||||| ||||  | ||||| ||||||||||||||||||||||||    
T  41691166 gattggaactctgtttgtctgaataagggggttggtggtttgggggtaaggag 41691218  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 17858184 - 17858216
Alignment:
Q  389 taaggaggttggtggtttgggggtaaggagaat 421  Q
    |||||||||||||||||||||||| ||||||||    
T  17858184 taaggaggttggtggtttgggggttaggagaat 17858216  T

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Target: scaffold0309 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 727 - 788
Alignment:
Q  402 ggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 463  Q
    ||||||||||| ||||| || ||||||||||  | |||||| ||||||||||||||||||||    
T  727 ggtttgggggtcaggaggatgagggagtttaatgttgctctattagggaagtggtgttggcg 788  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 26043 - 25970
Alignment:
Q  359 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 432  Q
    ||||||||||| ||| | |||||||   |||||||| |||||||| |||||||| | |||||||||||||||||    
T  26043 ttggattgattagaattatgtctgtataagtaaggatgttggtggattgggggtcatgagaattagggagttta 25970  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 49091 - 49146
Alignment:
Q  390 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctctttt 445  Q
    |||||||||| |||||||||||||||||||||||  ||||||| |  |||||||||    
T  49091 aaggaggttgatggtttgggggtaaggagaattatagagtttaacattgctctttt 49146  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 496
Target Start/End: Original strand, 5503 - 5620
Alignment:
Q  379 tctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagat 478  Q
    ||||||| ||| |||||||||| |||||||||| ||||||| | |  || ||||     ||| | ||||||||||||||||||||| ||||||| ||||     
T  5503 tctgtcggagtcaggaggttggaggtttgggggcaaggagattaaaagaatttaatttagctttattagggaagtggtgttggcgggtgttggtggagaa 5602  T
Q  479 ggacattttttggtttag 496  Q
    ||| | ||| ||||||||    
T  5603 ggagagtttgtggtttag 5620  T

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