View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2045_low_6 (Length: 574)
Name: NF2045_low_6
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 50 - 562
Target Start/End: Original strand, 40179854 - 40180366
Alignment:
| Q |
50 |
aatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtttcataccaatataataattg |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| || |
|
|
| T |
40179854 |
aatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatctccttagcttgtgtcatataactataataactg |
40179953 |
T |
|
| Q |
150 |
ccattgccacacataagagcatcataagtgcgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataag |
249 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
40179954 |
ccattgccacacgtaagagcatcataagtgtgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccctagcatcaacatagg |
40180053 |
T |
|
| Q |
250 |
ccttaataatcacattgaaaacgtattttgaaggacgcggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaa |
349 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40180054 |
tcttaataatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaa |
40180153 |
T |
|
| Q |
350 |
ccgacacaagcctgtaataacctgccgacagtgcaatagtttagtcccctcttcctggtgctccacctcctgagggaaatcaataacagtcaacaaatcc |
449 |
Q |
| |
|
| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
40180154 |
ctgacacaaggctgtaataaccttccgacagtgcgatagtttagtcccctcttccttgtgctccacctccttatggatatcaataacagtcaacaaatcc |
40180253 |
T |
|
| Q |
450 |
aaagccaaatatacagtttcttttcttgaacaaagtgtgccaaactcaaatattctatggggtaacatcctatctaacgctagcccccagtttgggtttc |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
40180254 |
aaagccaaatatacagtttcttttcttgaacaaagtgtgtcaaactcaaatattctatggggtaacagcctatctaactctagcccccagtttgggtttc |
40180353 |
T |
|
| Q |
550 |
ttttccatttctc |
562 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
40180354 |
ttttccgtttctc |
40180366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 38604498 - 38604671
Alignment:
| Q |
186 |
cctatactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggac |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| |||||| ||| | |||| | || ||||||| | || |||||| ||| ||||||| |
|
|
| T |
38604498 |
cctatactttccaatagcaacaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaacagattgtgaaggat |
38604597 |
T |
|
| Q |
286 |
gcggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
359 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38604598 |
atggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaag |
38604671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 38604333 - 38604432
Alignment:
| Q |
18 |
ttatcataattctgtagcttacaatttataaaaatgagcatatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
117 |
Q |
| |
|
|||||| |||| |||||||| |||| | || |||||| |||||| |||| ||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
38604333 |
ttatcaaaattatgtagcttgcaatatccaacaatgagtgaatggtacagcagagcaatgattaacttagaatccttctttctggcttcttccaagatct |
38604432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 485
Target Start/End: Original strand, 38604765 - 38604797
Alignment:
| Q |
453 |
gccaaatatacagtttcttttcttgaacaaagt |
485 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
38604765 |
gccaaatatacagtttctttttttgaacaaagt |
38604797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 359
Target Start/End: Complemental strand, 44460898 - 44460734
Alignment:
| Q |
189 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| || ||||||| | | ||| | | ||| |||||||| |
|
|
| T |
44460898 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t |
44460802 |
T |
|
| Q |
289 |
gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
359 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
44460801 |
gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44460734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 189 - 359
Target Start/End: Complemental strand, 44468431 - 44468267
Alignment:
| Q |
189 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| || ||||||| | | ||| | | ||| |||||||| |
|
|
| T |
44468431 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t |
44468335 |
T |
|
| Q |
289 |
gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
359 |
Q |
| |
|
||| ||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
44468334 |
gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44468267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 359
Target Start/End: Original strand, 34501786 - 34501950
Alignment:
| Q |
189 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacataagccttaataatcacattgaaaacgtattttgaaggacgcg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||| || ||||||| | | ||| | | ||| |||||||| |
|
|
| T |
34501786 |
atactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatattgaagga---t |
34501882 |
T |
|
| Q |
289 |
gtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
359 |
Q |
| |
|
||| ||| ||||||||||||||||| |||||||| ||||||||| || |||| |||||||| ||||||| |
|
|
| T |
34501883 |
gta---gactgtctgcaatcattttaaggatcaacttcttggctgcttctaaatttttaaacccacacaag |
34501950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 44461026 - 44460967
Alignment:
| Q |
58 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
117 |
Q |
| |
|
||||||| ||||||| || |||||||||| | |||| ||||||||||| ||||||||||| |
|
|
| T |
44461026 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct |
44460967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 44468559 - 44468500
Alignment:
| Q |
58 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
117 |
Q |
| |
|
||||||| ||||||| || |||||||||| | |||| ||||||||||| ||||||||||| |
|
|
| T |
44468559 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaagatct |
44468500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 46359697 - 46359639
Alignment:
| Q |
189 |
atactttccaatagcatcaccatctccaaagcttgtccgatttccccagcatcaacata |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||| |
|
|
| T |
46359697 |
atactttccaatagcatcaccatctccaaaacctgtccgacttccccagcattaacata |
46359639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 46359825 - 46359766
Alignment:
| Q |
58 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaagatct |
117 |
Q |
| |
|
||||||| ||||||| || |||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
46359825 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaagatct |
46359766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University