View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2045_low_8 (Length: 446)
Name: NF2045_low_8
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 13912409 - 13912002
Alignment:
| Q |
18 |
gaatcgaacttgagttaacgaaaaaattaaacacgatctcatttgatacaattattttaacttttttctaatagtggtatagtgcttaattggtgaggga |
117 |
Q |
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| T |
13912409 |
gaatcgaacttgagttaacgaaaaaattaaacacgatc--atttgatacaattattttaacttttttctaatagtggtatagtgattaattggtgaggga |
13912312 |
T |
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| Q |
118 |
taaatttaaaattacctgtatgaaagagtgagatggtgaaggaggacaagaacctcaagctttgcaagctcactaccaggacaagagtggactccatttc |
217 |
Q |
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| T |
13912311 |
taaatttaaaattacctgtatgaaagagtgagatggtgaaggaggacaagaacctcaagctttgcaagctcactaccaggacaagagtggactccatttc |
13912212 |
T |
|
| Q |
218 |
caaatggcatatatgtgtttggtcgaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatat |
317 |
Q |
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| T |
13912211 |
caaatggcatatatgtgtttggtcgaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatat |
13912112 |
T |
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| Q |
318 |
agctatagcaactatatacatatttgtattttttaaaatattaattagaaataactatatattgatagagaaatgaatatttgtactagggtacaaatgt |
417 |
Q |
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| T |
13912111 |
agctatagcaactatatacatatttgtattttttaaaatattaattagaaataactatatattgatagagaaatgaatatttgtactagggtacaaatgt |
13912012 |
T |
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| Q |
418 |
aaatcacgtg |
427 |
Q |
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| T |
13912011 |
aaatcacgtg |
13912002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 14320350 - 14320652
Alignment:
| Q |
30 |
agttaacgaaaaaattaaacacgatctcatttgatacaattattttaacttttttctaatagtggtatagtgcttaattggtgagggataaatttaaaat |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14320350 |
agttaacgaaaaaattaaacacgatc--atttgatacaattattttaacttttttctaatagtggtatagtgattaattggtgagggataaatttaaaat |
14320447 |
T |
|
| Q |
130 |
tacctgtatgaaagagtgagatggtgaaggaggacaagaacctcaagctttgcaagctcactaccaggacaagagtggactccatttccaaatggcatat |
229 |
Q |
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| T |
14320448 |
tacctgtatgaaagggtgagatggtgaaggaggacaagaacctcaagcttagcaagctcactaccaggacaagagtggactccatttccaaatggcatat |
14320547 |
T |
|
| Q |
230 |
atgtgtttggtcgaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaaaggtattggtaccaatatatatagctatagcaac |
329 |
Q |
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| T |
14320548 |
atgtgtttggtcgaggtggattctgcaccatcatataaaccaattaagtcaaccctaatgtcttaatggtatt------aatataaatagctatagcaac |
14320641 |
T |
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| Q |
330 |
tatatacatat |
340 |
Q |
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||||||||||| |
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| T |
14320642 |
tatatacatat |
14320652 |
T |
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