View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20460_high_12 (Length: 447)

Name: NF20460_high_12
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20460_high_12
NF20460_high_12
[»] chr4 (3 HSPs)
chr4 (171-437)||(10124166-10124432)
chr4 (192-396)||(28649788-28649992)
chr4 (19-81)||(10124015-10124076)
[»] chr2 (3 HSPs)
chr2 (188-399)||(21393062-21393273)
chr2 (188-437)||(21422334-21422587)
chr2 (302-405)||(1975176-1975279)
[»] chr3 (4 HSPs)
chr3 (179-430)||(25044298-25044549)
chr3 (201-430)||(25040582-25040811)
chr3 (192-405)||(54479360-54479573)
chr3 (224-430)||(25042759-25042958)
[»] chr1 (1 HSPs)
chr1 (224-430)||(24690534-24690740)
[»] chr7 (1 HSPs)
chr7 (272-345)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 171 - 437
Target Start/End: Original strand, 10124166 - 10124432
Alignment:
Q  171 tctagatcaagggtagggaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattata 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10124166 tctagatcaagggtagggaaggatcaagttgtttgcaaagttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattata 10124265  T
Q  271 cttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattacc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124266 cttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattacc 10124365  T
Q  371 ggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 437  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124366 ggtttcacacagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 10124432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 192 - 396
Target Start/End: Original strand, 28649788 - 28649992
Alignment:
Q  192 gatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattctt-ggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt 290  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||| || ||||  | ||| ||||||| | ||||||||||||||||| |||||||    
T  28649788 gatcaagttatttgcatagttcaagataagttaaataaagaactctattttttggcattg-ttctatgatggttgttatacttgcaaaaatacttcaatt 28649886  T
Q  291 gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttg 390  Q
    ||| ||| || |||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||  ||||||  |    
T  28649887 gtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgttttcacg 28649986  T
Q  391 attgca 396  Q
    ||||||    
T  28649987 attgca 28649992  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10124015 - 10124076
Alignment:
Q  19 acttttggtgaacccataagaaatacgtttccaaatataaattcattaaattagagtctgcag 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  10124015 acttttggtgaacccataagaaatacgtttccaaatataaattc-taaaaatagagtctgcag 10124076  T

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Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 188 - 399
Target Start/End: Complemental strand, 21393273 - 21393062
Alignment:
Q  188 gaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttca 287  Q
    |||||||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||  | || |||||||||||||| ||||    
T  21393273 gaaggatcaagttgttggcataattcaaaataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttca 21393174  T
Q  288 attgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttc 387  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  21393173 attgttcaagcttgcaacaaccgagcatttgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttc 21393074  T
Q  388 ttgattgcaatg 399  Q
    ||||||||||||    
T  21393073 ttgattgcaatg 21393062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 188 - 437
Target Start/End: Complemental strand, 21422587 - 21422334
Alignment:
Q  188 gaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttca 287  Q
    |||||||||||||| | ||| | ||||| ||||||||||||||||||  ||||||||||||| || ||||||||  | ||||||||||||||||| ||||    
T  21422587 gaaggatcaagttggtggcataattcaaaataagtcaaataaagaactgtattcttggcacctgtgcgatgatgattgttatacttgcaaaaatacttca 21422488  T
Q  288 attgttcaagcttacaacaaccaagcatttgtcct----agcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagt 383  Q
    | ||||||||||| ||||||||||||||||||||     ||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||| ||    
T  21422487 aatgttcaagcttgcaacaaccaagcatttgtcccggccagcaacagaaacaaccaatagatattctttttcttctcagcaattattggcttgacactgt 21422388  T
Q  384 tttcttgattgcaatgcacacacttcatcaatcttggatacatcaaagtctctg 437  Q
    |||||||||||||||||||||| ||   |||| |||||| ||||||| ||||||    
T  21422387 tttcttgattgcaatgcacacatttaggcaattttggattcatcaaattctctg 21422334  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 405
Target Start/End: Original strand, 1975176 - 1975279
Alignment:
Q  302 caacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgca 401  Q
    |||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||| ||||||||| || |||||||  |||| |||||||||||| |    
T  1975176 caacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaatgta 1975275  T
Q  402 caca 405  Q
    ||||    
T  1975276 caca 1975279  T

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Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 179 - 430
Target Start/End: Original strand, 25044298 - 25044549
Alignment:
Q  179 aagggtagggaaggatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaa 278  Q
    |||||||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||||| | |||||||||||||    
T  25044298 aagggtacagaaggatcaagttgtttgcatagttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaa 25044397  T
Q  279 aatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcac 378  Q
    |||| |||||||||| ||| || |||||||| ||||||||||| | || |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  25044398 aatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcac 25044497  T
Q  379 acagttttcttgattgcaatgcacacacttcatcaatcttggatacatcaaa 430  Q
    || ||||||||  ||||||||||||||  |   ||||||||||| |||||||    
T  25044498 actgttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaa 25044549  T

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Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 201 - 430
Target Start/End: Original strand, 25040582 - 25040811
Alignment:
Q  201 gtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagctt 300  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||| | ||||||||| |  || |||||||||||||| |||||||||||||||||    
T  25040582 gtttgcatagttcaaaataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagctt 25040681  T
Q  301 acaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgc 400  Q
     ||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||  ||||||||||||||||||    
T  25040682 gcaacaaccaattatttgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgc 25040781  T
Q  401 acacacttcatcaatcttggatacatcaaa 430  Q
    | ||| ||   |||| |||||| |||||||    
T  25040782 aaacattttggcaattttggattcatcaaa 25040811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 405
Target Start/End: Complemental strand, 54479573 - 54479360
Alignment:
Q  192 gatcaagttgtttgcaaagttcaagataagtcaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattg 291  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| | |  |||||   |  | |  ||||| ||||| ||||  ||    
T  54479573 gatcaagttgtttgcagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctg 54479474  T
Q  292 ttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttga 391  Q
    || | || | || || ||||||||||||||||  |||||||||| ||| |||||| ||  |||||| |||||||||||||||||||||| ||||| ||||    
T  54479473 tttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttga 54479374  T
Q  392 ttgcaatgcacaca 405  Q
    || || ||||||||    
T  54479373 ttacagtgcacaca 54479360  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 430
Target Start/End: Original strand, 25042759 - 25042958
Alignment:
Q  224 aaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtccta 323  Q
    ||||| ||||||||||| ||||||| ||| ||||||||| |     ||||| ||| |||||||| | |||||||||| || || |||||||||||||| |    
T  25042759 aaatatagaaccctatttttggcactggtacgatgatggttg----acttgaaaatatatttcagtggttcaagcttgcagcagccaagcatttgtccca 25042854  T
Q  324 gcaacagaaacaaccaattgatatt--ctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttgga 421  Q
     |||||||| || | | ||||||||  |||||||||||  |||| |||| | |||||||   | ||| |||   ||||||||||||||| ||||||||||    
T  25042855 acaacagaagcatctagttgatattatctttttcttcttggcaagtaccagtttcacac---tatctcgata--aatgcacacacttcagcaatcttgga 25042949  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 224 - 430
Target Start/End: Original strand, 24690534 - 24690740
Alignment:
Q  224 aaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtccta 323  Q
    ||||||| || |||||| |||||||  |||||||||||  | |||||||||||||||||  | |||| |||| |||| |||||||||| ||||||||  |    
T  24690534 aaataaaaaaacctatttttggcacttgttcgatgatgattgttatacttgcaaaaataccttaattattcatgcttgcaacaaccaatcatttgtctca 24690633  T
Q  324 gcaacagaaacaaccaattgatattctttttcttctcagcaattaccggcttcacacagttttcttgattgcaatgcacacacttcatcaatcttggata 423  Q
    | ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||  | |||||||||||||||| ||||| ||   |||||||||||     
T  24690634 gaaacagaaacaatcaattgatattctttttcttctcaataattaccggcttcacattggtttcttgattgcaatgtacacattttgacaatcttggatt 24690733  T
Q  424 catcaaa 430  Q
    |||||||    
T  24690734 catcaaa 24690740  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 39600467 - 39600540
Alignment:
Q  272 ttgcaaaaatatttcaattgttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgat 345  Q
    ||||| ||||||||||| |||| |||||| ||||| |||| ||| || || | ||||| |||||||||||||||    
T  39600467 ttgcagaaatatttcaaatgttgaagcttgcaacacccaatcatctgacccaacaacaaaaacaaccaattgat 39600540  T

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