View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_high_14 (Length: 432)
Name: NF20460_high_14
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 48568014 - 48568422
Alignment:
| Q |
1 |
gcctcaagagagttgaaatgatgtaaacagaattaagaatggaaataagaaaagaacaaaaatttgacttatttgctagatcccacttattggatgtgtt |
100 |
Q |
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| T |
48568014 |
gcctcaagagagttgaaatgatttaaacagaattaagaatggaaataagaaaagaacaaaaatttgacttatttgctagatcacacttattggatgtgtt |
48568113 |
T |
|
| Q |
101 |
tttgatgtaaaaataataaactttgatattttttcacatgtttctctcgttatcttcatccattttcgttcgtccatactttaagtgatgtcacactttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48568114 |
tttgatgtaaaaataataaactttgatattttttcacatgtttctctcgttatcttcatccattttcgttcgtccatactttaagtgatgtcacactttg |
48568213 |
T |
|
| Q |
201 |
caaactacagatacatttcttttcatctatccttgtgaaaattatgttacttccagggggaaaggtgattatcagattgactatgtaccagcaccacgag |
300 |
Q |
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| T |
48568214 |
caaactacagatacatttcttttcatctatccttgtgaaaattatgttacttccagggggaaaggtgattatcagattgactatgtaccagcaccacgag |
48568313 |
T |
|
| Q |
301 |
tcgctgaagcagacaaaagcaatgatcaaaggtgtgcaccaatttaagcagactaatcactcgtgtgatttaaagcaagaaaatgtaataaaaaatctgg |
400 |
Q |
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| T |
48568314 |
tcactgaagcagacaaaagcaatgatcaaaggtgtgcaccaatttaagcagactaatcactcgtgtgatttaaagcaagaaaatgtaataaaaaatctgg |
48568413 |
T |
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| Q |
401 |
agtataata |
409 |
Q |
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| T |
48568414 |
agtataata |
48568422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 10823055 - 10822963
Alignment:
| Q |
251 |
ttccagggggaaaggtgattatcagattgactatgtaccagcaccacgagtcgctgaagcagacaaaagcaatgatcaaaggtgtgcaccaat |
343 |
Q |
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| T |
10823055 |
ttccagggggaaaggtgattatcagattgactatgtgccagcaccgcgaatcaccgaagcagacaaacaaaatgatcgaaggtatgcaccaat |
10822963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 36144282 - 36144389
Alignment:
| Q |
251 |
ttccagggggaaaggtgattatcagattgactatgtaccagcaccacgagtcgctgaagcagacaaaagcaatgatcaaaggtgtgcaccaatttaagca |
350 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| ||| || | |||||||||||| ||||||| ||||| ||||||||||| |||| |
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| T |
36144282 |
ttccagagggaaaggtgattatcagattgactatgtgccagcaccgcgaatcaccgaagcagacaaacaaaatgatcgaaggtatgcaccaattt-agca |
36144380 |
T |
|
| Q |
351 |
gactaatca |
359 |
Q |
| |
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|||| |||| |
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| T |
36144381 |
gactgatca |
36144389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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