View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20460_high_2 (Length: 707)

Name: NF20460_high_2
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20460_high_2
NF20460_high_2
[»] chr7 (5 HSPs)
chr7 (19-155)||(8179159-8179295)
chr7 (280-468)||(8179563-8179735)
chr7 (609-651)||(8195579-8195621)
chr7 (653-691)||(8195687-8195725)
chr7 (547-581)||(8195493-8195527)
[»] chr2 (2 HSPs)
chr2 (214-378)||(33662450-33662613)
chr2 (210-304)||(33662378-33662468)
[»] chr1 (4 HSPs)
chr1 (210-315)||(20014302-20014403)
chr1 (238-378)||(20014605-20014746)
chr1 (249-306)||(20014268-20014326)
chr1 (214-254)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (165-215)||(47444469-47444519)
chr3 (210-306)||(6524724-6524816)
chr3 (246-290)||(44364931-44364975)
chr3 (249-289)||(6524651-6524691)
chr3 (252-306)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (158-197)||(36130417-36130456)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 9e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 8179159 - 8179295
Alignment:
Q  19 agctaaaagtgtaccgttatcctcatctgtcaatgttggatgcatatactccatatcagctgccaaagtattctgattgtttgcaaacaagtgtgtgaaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8179159 agctaaaagtgtaccattatcctcatctgtcaatgttggatgcatatactccatatcagctgccaaagtattctgattgtttgcaaacaagtgtgtgaaa 8179258  T
Q  119 taggagctagcaaccccacataactcttgctgacccg 155  Q
    |||||||||||||||||||||||||||||||||||||    
T  8179259 taggagctagcaaccccacataactcttgctgacccg 8179295  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 280 - 468
Target Start/End: Original strand, 8179563 - 8179735
Alignment:
Q  280 ttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagatagatggtttgtattcgtct 379  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||                  |||||||||    
T  8179563 ttgtttaattagaaacttaggatttgaatcatatgcagtcatgtatcatgcagttgttgatctcggtcgtttg------------------tattcgtct 8179644  T
Q  380 gcaagtactggaacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat---gaacttgcactccat 468  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  8179645 gcaagtgctg-aacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaatgaagaacttgcactccat 8179735  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 651
Target Start/End: Original strand, 8195579 - 8195621
Alignment:
Q  609 aaaaacaatcaggtagcacatacatttgatgaaattcatttat 651  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  8195579 aaaaacaattaggtagcacatacatttgttgaaattcatttat 8195621  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 691
Target Start/End: Original strand, 8195687 - 8195725
Alignment:
Q  653 aaatgatttattttttgactattactttttccatcctat 691  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8195687 aaatgatttattttttgactattactttttccaccctat 8195725  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 581
Target Start/End: Original strand, 8195493 - 8195527
Alignment:
Q  547 cgttatgagaatgaacttttccgtaaatcaatttt 581  Q
    |||||||||||||||||||||| ||||||||||||    
T  8195493 cgttatgagaatgaacttttccttaaatcaatttt 8195527  T

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Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 33662450 - 33662613
Alignment:
Q  214 aattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatat 313  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||  ||    
T  33662450 aattggaaaattaagatttcacttatatgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattgaaaacttagaatttgactc--at 33662547  T
Q  314 gttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagat-agatggtttgtattcgtc 378  Q
    || | | ||||||||||||| ||| || || |||||||||  ||||| ||||||||||||||||||    
T  33662548 gtagccctgtatcatgcagtcgttaatctcagtcgtttgattgagatcagatggtttgtattcgtc 33662613  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 33662378 - 33662468
Alignment:
Q  210 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggattt 304  Q
    ||||| ||||||||| |||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  33662378 tttaatttggaaaataaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagattt 33662468  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 20014302 - 20014403
Alignment:
Q  210 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatc 309  Q
    ||||| |||||||||||||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| ||    
T  20014302 tttaatttggaaaattaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagagttgactc 20014397  T
Q  310 atatgt 315  Q
    ||||||    
T  20014398 atatgt 20014403  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 238 - 378
Target Start/End: Original strand, 20014605 - 20014746
Alignment:
Q  238 atatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgtt 337  Q
    ||||||| |||||||||||||||||||| |||||  |||||||||| |||||  ||||||||||||||| |||  ||| | ||||||||||||| | |||    
T  20014605 atatgtagtgcatttaatttaatttaatcaattgcttcgtttttgtttaattaaaaacttaggatttgactcaagtgtagccatgtatcatgcaatcgtt 20014704  T
Q  338 gatatcggtcgtttgaaggagat-agatggtttgtattcgtc 378  Q
     || ||| |||||||| ||||||  ||||| |||||||||||    
T  20014705 aatctcgatcgtttgatggagatctgatggattgtattcgtc 20014746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 20014268 - 20014326
Alignment:
Q  249 atttaatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 306  Q
    ||||||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||||    
T  20014268 atttaatttaatttaatcaattgtgatgtttttgtttaatttggaaaattaggatttga 20014326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 20014374 - 20014414
Alignment:
Q  214 aattggaaaattaggatttgactcatatgtaatgcatttaa 254  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  20014374 aattggaaaattaagagttgactcatatgtagtgcatttaa 20014414  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 47444469 - 47444519
Alignment:
Q  165 aatttcaaattaacattagttagcaaagcaaaagtagtcaacgtctttaaa 215  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  47444469 aatttcaaatcaacattagttagcaaagcaaaagtggtcaacgtctttaaa 47444519  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 6524816 - 6524724
Alignment:
Q  210 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttga 306  Q
    ||||| |||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||||||||||  |||||| || ||| |||||||    
T  6524816 tttaatttggaaaattaggatttgact----tttagtgcatttaatttaacttaatcaattgtgtcgtttttgttcaattggtaaattaagatttga 6524724  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 44364931 - 44364975
Alignment:
Q  246 tgcatttaatttaatttaataaattgtgtcgtttttgtgtaattg 290  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44364931 tgcatttaatttaatttaatcaattgtgtcgtttttgtttaattg 44364975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 6524691 - 6524651
Alignment:
Q  249 atttaatttaatttaataaattgtgtcgtttttgtgtaatt 289  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6524691 atttaatttaatttaatcaattgtgtcgtttttgtttaatt 6524651  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 6524847 - 6524792
Alignment:
Q  252 taatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 306  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||||    
T  6524847 taatttaatttaatcaattgtgttgtttttgtttaatttggaaaattaggatttga 6524792  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 36130417 - 36130456
Alignment:
Q  158 attgatgaatttcaaattaacattagttagcaaagcaaaa 197  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36130417 attgatgaatttcaaattaacattaattagcaaagcaaaa 36130456  T

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