View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_high_22 (Length: 340)
Name: NF20460_high_22
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 37 - 328
Target Start/End: Complemental strand, 23908708 - 23908418
Alignment:
| Q |
37 |
cgtctcttattgtcaacttaatagcagcgcgttccataagtcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
136 |
Q |
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| T |
23908708 |
cgtctcttattgtcaacttaatagcagcgcgttccataatgcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
23908609 |
T |
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| Q |
137 |
ataatctgatctgggaattttcatccgtnnnnnnnggcattcattatgtgacctttcatgaggcattcgatagcaaacaattgccaaatgcttgacagtt |
236 |
Q |
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| T |
23908608 |
ataatctgatctgggaattttcatccgtaaaaaaaggcattcattatgtgacctttcatgaggcatttgatagcaaacaatttccaaatgcttgacagtt |
23908509 |
T |
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| Q |
237 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaacttatatgataatttgtgtcaaaatcaagatatt |
328 |
Q |
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| T |
23908508 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaa-tattatgataatttgtgtcaaaatcaagatatt |
23908418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 23908853 - 23908731
Alignment:
| Q |
3 |
caacaactgatattacttcctttcgtctcttttccgtctcttattgtcaacttaatagcagcgcgttccataagtcttcttttctcgagacggtaatgat |
102 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23908853 |
caacaattgatattacttcctttcatctcttttccgtctcttattgtcaacttaatagcagcgcgttccataatgcttcttttctcgagacggtaatgat |
23908754 |
T |
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| Q |
103 |
tccttccttatctacttgattaa |
125 |
Q |
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| T |
23908753 |
tccttccttatctacttaattaa |
23908731 |
T |
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