View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20460_high_26 (Length: 305)
Name: NF20460_high_26
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 42310135 - 42310411
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
42310135 |
ttgtgacaaacaaattaaagtgaaattgataaaagtcattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgcgatacttgtctac |
42310234 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
200 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42310235 |
catagattatcactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
42310334 |
T |
|
| Q |
201 |
gatgcctcatcaagagaccatcctttcataatcaagtgttatccatcattcaattcaacatagccttaacaaaccat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
42310335 |
gatgcctcatcaagagaccatcctttcataatcaaatgtcatccatcattcaattcaacatagccttaccaatccat |
42310411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 47249232 - 47248948
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47249232 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatatttgtctatcataataaagtgaaattgataaaagtcattgtgatacttgtctac |
47249133 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
200 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||| |
|
|
| T |
47249132 |
cataaattatcagtaataacactaattgtttcataaaacatgcaacactatttatataaaagattatgcag---taggaggaggattctgcatatctttc |
47249036 |
T |
|
| Q |
201 |
gatgcctcatcaagagaccatcctttcataatcaagtgttatccatcattcaattcaacatagccttaacaaaccattaccaatccat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47249035 |
gatgcctcatcaagagaccatcctttcataatcaagtgttatccatcattcaattcaacatagccttaacaaaccattaccaatccat |
47248948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 41325102 - 41325192
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41325102 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttgtctatcataataaagtgaaattgataaaagtcattgtgata |
41325192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 61 - 288
Target Start/End: Original strand, 10009769 - 10009994
Alignment:
| Q |
61 |
taaagtgaaattgataaaagtcattgtgatagttgtctatcataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaa |
160 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||||||||| ||||||||| ||| |||| ||||| |
|
|
| T |
10009769 |
taaagcgaaattaataaaagtcattgtgatatttgtctaccataaattagtagtaataacagtaattgtttcataaaacatgcaatactgtttacataaa |
10009868 |
T |
|
| Q |
161 |
agattatgcagcatgaggaagaagattctgcatatccttcgatgcctcatcaagaga-ccatcctttcataatcaagtgttatccatcattcaattcaac |
259 |
Q |
| |
|
|||||||||||| |||| ||| || |||||| |||| |||| ||||||||||| || || ||||| ||| | ||||||| || || | | |||| |
|
|
| T |
10009869 |
agattatgcagc---aggagcaagcttatgcataatcttctatgcgtcatcaagagacccttcttttcacaattacgtgttattcactgtttactgcaac |
10009965 |
T |
|
| Q |
260 |
atagccttaacaaaccattaccaatccat |
288 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10009966 |
atagccttaacaaaccattaccaatccat |
10009994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 41325117 - 41325161
Alignment:
| Q |
61 |
taaagtgaaattgataaaagtcattgtgatagttgtctatcataa |
105 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
41325117 |
taaagtgaaattgataaaagccattgtaatacttgtctatcataa |
41325161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20905743 - 20905984
Alignment:
| Q |
1 |
ttgtgacaaacaaattaaagtgaaattgataaaagccattgtaatacttctctatcgtaataaagtgaaattgataaaagtcattgtgatagttgtctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20905743 |
ttgtgacaaacaaattaaagtgaaattgataaaaggcattgtaatacttgtctatcataataaagtgaaattgataaaagtcattgtgatacttgtctac |
20905842 |
T |
|
| Q |
101 |
cataaattataactaataacaataattgtttcatagaacatgcaacactatttatataaaagattatgcagcatgaggaagaagattctgcatatccttc |
200 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
20905843 |
cataaattatcagtaataacaataattgtttcataaaacatgcaacgctatttatataaaagattatgcaacatgag---gaagattctgcatatccttc |
20905939 |
T |
|
| Q |
201 |
gatgcctcatcaagagaccatcctttcataatcaagtgttatcca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20905940 |
aatgcctcatcaagagaccatcctttcataatcaagtgttatcca |
20905984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 12390487 - 12390547
Alignment:
| Q |
228 |
ataatcaagtgttatccatcattcaattcaacatagccttaacaaaccattaccaatccat |
288 |
Q |
| |
|
||||| ||||||||| |||| || | | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
12390487 |
ataattaagtgttattcatcgtttactgcaacatagccttaacaaaccatttccaatccat |
12390547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 16044469 - 16044377
Alignment:
| Q |
197 |
cttcgatgcctcatcaagagaccatcc-tttcataatcaagtgttatccatcattcaattcaacatagccttaacaaaccattaccaatccat |
288 |
Q |
| |
|
|||| |||||||| ||||||||| || ||| ||||| ||||||||| || | || | | ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
16044469 |
cttcaatgcctcacaaagagaccaaccattttataattaagtgttattcaccgtttactgcaacatagcctcaacaaaccatttccaatccat |
16044377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University