View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20460_high_27 (Length: 303)
Name: NF20460_high_27
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_high_27 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 40207973 - 40207671
Alignment:
| Q |
1 |
agattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40207973 |
agattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaag |
40207874 |
T |
|
| Q |
101 |
taacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40207873 |
taacccaagcaaagagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgt |
40207774 |
T |
|
| Q |
201 |
tattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagacaatacttaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40207773 |
tattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagtcaatacttaa |
40207674 |
T |
|
| Q |
301 |
tta |
303 |
Q |
| |
|
||| |
|
|
| T |
40207673 |
tta |
40207671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 40199654 - 40199384
Alignment:
| Q |
1 |
agattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaag |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
40199654 |
agattggaatgaacagcatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcgcatagaagaatggaagtgtagtaag |
40199555 |
T |
|
| Q |
101 |
taacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
40199554 |
taacccaagcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgt |
40199455 |
T |
|
| Q |
201 |
tattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
40199454 |
tattacatgtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 40203817 - 40203555
Alignment:
| Q |
1 |
agattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| || || |||| |
|
|
| T |
40203817 |
agattggaatgaacaacatccatgtaagtatagtttctcttgccactgataggatcaccagtacgataacattcacagagaagaatggaggtataataag |
40203718 |
T |
|
| Q |
101 |
taacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
40203717 |
taacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgt |
40203618 |
T |
|
| Q |
201 |
tattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
263 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40203617 |
tattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 10299650 - 10299851
Alignment:
| Q |
23 |
tgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcat |
122 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||||||||| || |||||||| ||| |||||||||||||| | | || |||| ||| |
|
|
| T |
10299650 |
tgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcat |
10299749 |
T |
|
| Q |
123 |
aacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtc |
222 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||| |
|
|
| T |
10299750 |
cattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtc |
10299849 |
T |
|
| Q |
223 |
ca |
224 |
Q |
| |
|
|| |
|
|
| T |
10299850 |
ca |
10299851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
129 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
228 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
|
|
| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
229 |
gttcctg |
235 |
Q |
| |
|
|||||| |
|
|
| T |
39429274 |
cttcctg |
39429280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
129 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
228 |
Q |
| |
|
||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
|
|
| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
|
| Q |
229 |
gttcc |
233 |
Q |
| |
|
|||| |
|
|
| T |
6249334 |
cttcc |
6249330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University