View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20460_high_35 (Length: 220)

Name: NF20460_high_35
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20460_high_35
NF20460_high_35
[»] chr5 (11 HSPs)
chr5 (9-203)||(37215469-37215663)
chr5 (9-178)||(22600918-22601087)
chr5 (9-178)||(11849917-11850085)
chr5 (9-178)||(11852175-11852343)
chr5 (9-178)||(23164254-23164418)
chr5 (9-130)||(37207878-37207999)
chr5 (9-179)||(21743628-21743798)
chr5 (9-181)||(1779219-1779386)
chr5 (104-178)||(37207996-37208070)
chr5 (90-178)||(15469171-15469258)
chr5 (37-77)||(1779181-1779221)
[»] chr1 (9 HSPs)
chr1 (9-179)||(2403834-2404005)
chr1 (25-178)||(2409957-2410111)
chr1 (9-179)||(29833878-29834047)
chr1 (9-178)||(29833076-29833253)
chr1 (9-178)||(8933549-8933718)
chr1 (9-178)||(10909114-10909292)
chr1 (9-178)||(10911358-10911535)
chr1 (9-178)||(13011704-13011881)
chr1 (9-178)||(734579-734756)
[»] chr4 (11 HSPs)
chr4 (9-178)||(50855771-50855939)
chr4 (9-178)||(42468439-42468617)
chr4 (9-178)||(42470768-42470946)
chr4 (9-178)||(13774157-13774336)
chr4 (9-178)||(45162185-45162364)
chr4 (9-182)||(19429072-19429255)
chr4 (9-176)||(45167077-45167254)
chr4 (9-175)||(13776455-13776630)
chr4 (9-180)||(8739399-8739564)
chr4 (36-78)||(24908156-24908198)
chr4 (8-65)||(43179653-43179710)
[»] chr7 (20 HSPs)
chr7 (9-178)||(8733495-8733675)
chr7 (9-178)||(42678571-42678739)
chr7 (9-178)||(3932721-3932899)
chr7 (9-178)||(3934960-3935138)
chr7 (16-178)||(8414490-8414662)
chr7 (9-178)||(8731176-8731353)
chr7 (26-182)||(18395337-18395501)
chr7 (9-178)||(3052210-3052387)
chr7 (9-178)||(36464213-36464401)
chr7 (81-178)||(16496953-16497049)
chr7 (81-178)||(16535135-16535231)
chr7 (81-178)||(16630431-16630527)
chr7 (9-79)||(19786769-19786839)
chr7 (84-178)||(19789178-19789272)
chr7 (84-176)||(19786872-19786964)
chr7 (9-79)||(19789075-19789145)
chr7 (34-176)||(21769071-21769220)
chr7 (9-77)||(28610350-28610418)
chr7 (117-176)||(19093846-19093903)
chr7 (124-178)||(42680808-42680862)
[»] scaffold0599 (1 HSPs)
scaffold0599 (9-178)||(1622-1801)
[»] chr3 (3 HSPs)
chr3 (9-178)||(4530841-4531020)
chr3 (9-178)||(4533138-4533317)
chr3 (9-77)||(18966221-18966289)
[»] scaffold0050 (2 HSPs)
scaffold0050 (9-179)||(31660-31830)
scaffold0050 (9-178)||(29345-29514)
[»] chr8 (6 HSPs)
chr8 (9-178)||(24519153-24519332)
chr8 (9-183)||(4879326-4879509)
chr8 (9-178)||(4876998-4877176)
chr8 (10-178)||(36379465-36379644)
chr8 (10-178)||(36377181-36377359)
chr8 (9-178)||(21268120-21268308)
[»] chr2 (11 HSPs)
chr2 (10-178)||(31486890-31487069)
chr2 (38-172)||(8995076-8995210)
chr2 (9-178)||(42275556-42275733)
chr2 (9-178)||(42277782-42277959)
chr2 (10-178)||(31489174-31489353)
chr2 (9-178)||(23860009-23860187)
chr2 (84-178)||(5164151-5164244)
chr2 (9-170)||(34576612-34576769)
chr2 (8-168)||(29801985-29802152)
chr2 (54-172)||(15729975-15730093)
chr2 (116-178)||(39816089-39816151)
[»] scaffold0008 (1 HSPs)
scaffold0008 (79-178)||(88433-88531)
[»] chr6 (2 HSPs)
chr6 (37-176)||(20642221-20642359)
chr6 (9-69)||(21199314-21199374)
[»] scaffold1361 (1 HSPs)
scaffold1361 (84-178)||(46-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (99-178)||(3707-3785)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 37215469 - 37215663
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37215469 tagatatttctagttggtaatgaagagccttcctagagtagtataaataaggctcaccacatagtgttttgcatcatcaagcattgaagcattcaaataa 37215568  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccactttggagtccattgctaaggatac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37215569 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccactttggagtccattgctaaggatac 37215663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 22600918 - 22601087
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22600918 tagatatttctagttggtaatggagagtcttgctaaagtagtataaataaggctcaccacctagtgttttggatcatcaagcattgaagcattcaaataa 22601017  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22601018 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 22601087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 11850085 - 11849917
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  11850085 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggatcatcaagcattgaatcattcaaataa 11849986  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  11849985 tataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11849917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 11852343 - 11852175
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||    
T  11852343 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggatcgtcaagcattgaatcattcaagtaa 11852244  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  11852243 tataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11852175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 23164418 - 23164254
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    |||||||||| ||||||| |||    
T  23164418 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggcccaccacctagtgttttggat----aagcattgaatcattcaagtaa 23164323  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23164322 tataa-cttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 23164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 37207878 - 37207999
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207878 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 37207977  T
Q  109 tataatcttttctttgagaata 130  Q
    ||||||||||||||||||||||    
T  37207978 tataatcttttctttgagaata 37207999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 21743628 - 21743798
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaata 107  Q
    |||||| || ||||| ||| || ||||||||||||||||||||||||||||  |||||||| |||| || | |||  ||||||||||||| |||||||||    
T  21743628 tagatatttttagtttgtagtgtagagccttcctagagtagtataaataagattcaccaccaagtggttaggcatactcaagcattgaagaattcaaata 21743727  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccac 179  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  21743728 atataaacttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccctgggccac 21743798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 1779386 - 1779219
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaata 107  Q
    ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | |||||||||  |  |||||| |||||| ||||||| ||    
T  1779386 tagataattctagtttgtaatgtagagccttcctagagtggtataaataaggctcaccaacaagtgttttgtaaaaatcaagtattgaatcattcaagta 1779287  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccactt 181  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||     || |||||||||||||||||||||    
T  1779286 atataa-cttttctttgagaatattagagtgttcctctattttct-----tttccttttgtccctgagccactt 1779219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 37207996 - 37208070
Alignment:
Q  104 aataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207996 aataatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 15469171 - 15469258
Alignment:
Q  90 cattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||| ||||||||||||||||  | |||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  15469171 cattcaagcattcaaataataacaacttt-ctttgagaatattagagagtttctctattttttttacctttccttttgtccctgagcca 15469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 1779221 - 1779181
Alignment:
Q  37 cttcctagagtagtataaataaggctcaccacctagtgttt 77  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  1779221 cttcctagagtagtataaataaggctcaccaccaagtgttt 1779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 2404005 - 2403834
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaata 107  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| ||||||||||    
T  2404005 tagatatttctagtttgtaatggagagtcttcctagagtagtataaataaggttcaccacttagtgttttggcatcatcaagcatagaaacattcaaata 2403906  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccac 179  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2403905 atataatattttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgagccac 2403834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 2410111 - 2409957
Alignment:
Q  25 gtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaataatataatcttttcttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||    
T  2410111 gtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatcatcaagcatagaaacattcaaataatataatattttcttt 2410012  T
Q  124 gagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  2410011 gagaatattatagagtttctctattttctctacctttccttttgtccctgagcca 2409957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 29833878 - 29834047
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| | ||||| |||    
T  29833878 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcactacctagtgttttggatgatcaagcattgaatccttcaagtaa 29833977  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccac 179  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  29833978 tataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccac 29834047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 29833253 - 29833076
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc---------atcatcaagcattgaagca 99  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||    
T  29833253 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcacattcaaatcatcaagcattgaatca 29833154  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29833153 ttcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 29833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 8933718 - 8933549
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc-atcatcaagcattgaagcattcaaata 107  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||  |||||||||| |  ||||||||||||| ||||||| ||    
T  8933718 tagataattctagtttgtaatgtagaaccttcctagagtagtataaataaggctcaccactaagtgttttgcaagaatcaagcattgaatcattcaagta 8933619  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  8933618 atataa-cttttctttgaaaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 8933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 10909114 - 10909292
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||| |   |||       ||||||||||||| ||    
T  10909114 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagcattgaatca 10909213  T
Q  100 ttcaaataatataatcttttc-tttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  10909214 ttcaagtaatataa-cttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 10909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 10911358 - 10911535
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||  ||||||| |   |||       ||||||||||||| ||    
T  10911358 tagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagcattgaatca 10911457  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  10911458 ttcaagtaatataa-cttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagcca 10911535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 13011704 - 13011881
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| || |||||  ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |   |||       ||||||||||||| ||    
T  13011704 tagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattcaaagaatcaagcattgaatca 13011803  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  13011804 ttcaaataatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgttcctgagcca 13011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 734756 - 734579
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||            || |||||||||||||     
T  734756 tagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccacctagtgttttggtcatactcaagataatcaagcattgaat 734657  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
     |||||| |||||||| |||||| |||||||||||  || |||||||||||||||||||||| ||||||||||||||||||    
T  734656 gattcaagtaatataa-cttttccttgagaatatt--agtgtttctctattttctctacctttccttttgtccctgagcca 734579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 50855939 - 50855771
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||    
T  50855939 tagatatttctagttggtaatggagagccttcctagagtagtataaataaggttcaccacctagtgttttggatcatcaagcattgaatcattcaagtaa 50855840  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  50855839 tataa-cttttcctcgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 50855771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 42468617 - 42468439
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------catcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||          |||||||||||||||||||    
T  42468617 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccatctagtgttttggatactgaagcatcatcaagcattgaagc 42468518  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42468517 attcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42468439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 42470946 - 42470768
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------catcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||          |||||||||||||||||||    
T  42470946 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccatctagtgttttggatactgaagcatcatcaagcattgaagc 42470847  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42470846 attcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 13774157 - 13774336
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||     
T  13774157 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagcattgaat 13774256  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  13774257 cattcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 13774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 45162185 - 45162364
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||           ||||||||| |||||||     
T  45162185 tagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattgaat 45162284  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  45162285 cattcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 45162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 19429255 - 19429072
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc----------atcatcaagcattgaagc 98  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |           ||  |||||||||||| |    
T  19429255 tagatatttctagtttgtaatggagagcctacctagagtagtataaataaggctcaccaccaagtgtttagatatattcaagatactcaagcattgaatc 19429156  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccacttt 182  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  19429155 attcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagccacttt 19429072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 45167077 - 45167254
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgtttt-----------gcatcatcaagcattgaag 97  Q
    |||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||           |||||||||| |||||||     
T  45167077 tagatatttctagtttgtaatggagagtcttcctagaatagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaaacattgaat 45167176  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagc 176  Q
    |||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||  || ||| |||||||||| |||||    
T  45167177 cattcaaataatataa-cttttttttaagaatattagagtgtttctctattttcggtaactttccttttgtccatgagc 45167254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 13776455 - 13776630
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| |  ||||||| |   |||       ||||||||||||| ||    
T  13776455 tagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcaccgctaagtgtttaggcacattcaaagaatcaagcattgaatca 13776554  T
Q  100 ttcaaataatataatcttttc-tttgagaatattagagagtttctctattttctctaccttcccttttgtccctgag 175  Q
    ||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  13776555 ttcaagtaatataa-cttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 8739399 - 8739564
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    |||||| |||||||| |||||| |||||||||||||||| ||||||| |||||| |||||| ||||||     |  |||| |||||||| |||||| |||    
T  8739399 tagatatttctagtttgtaatgtagagccttcctagagttgtataaacaaggcttaccaccaagtgtt-----tactcaatcattgaagaattcaactaa 8739493  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccact 180  Q
    ||  ||| |||| ||||||| |||||||||||||| ||||||||||  ||| |||||| |||||||||||||    
T  8739494 taatatc-tttccttgagaacattagagagtttctttattttctctttctttccttttatccctgagccact 8739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 24908198 - 24908156
Alignment:
Q  36 ccttcctagagtagtataaataaggctcaccacctagtgtttt 78  Q
    |||||||||||||||||||||| || |||||||| ||||||||    
T  24908198 ccttcctagagtagtataaatagggttcaccaccaagtgtttt 24908156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 43179653 - 43179710
Alignment:
Q  8 gtagataattctagttggtaatggagagccttcctagagtagtataaataaggctcac 65  Q
    ||||||| |||||||| |||||| ||||  || |||||||||||||||| ||||||||    
T  43179653 gtagatatttctagtttgtaatgcagagtttttctagagtagtataaattaggctcac 43179710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 8733675 - 8733495
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc-----------atcatcaagcattgaag 97  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||    
T  8733675 tagatatttctagtttgtaaaggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagaatcatcaagcattgaag 8733576  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8733575 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgagcca 8733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 42678739 - 42678571
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataa 108  Q
    ||||||||||||||| |||||| ||| |||||| |  |||||||||||||||||||||||| ||||||||| |  ||||||||||||| ||||||| |||    
T  42678739 tagataattctagtttgtaatgtagaaccttcccaaggtagtataaataaggctcaccaccaagtgttttgaaggatcaagcattgaatcattcaagtaa 42678640  T
Q  109 tataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  42678639 tataa-cttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgagcca 42678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 3932721 - 3932899
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------catcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||          ||| ||||||||||||| |    
T  3932721 tagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttggatactcaagcataatcaagcattgaatc 3932820  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  3932821 attcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 3932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 3934960 - 3935138
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg----------catcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||          ||| ||||||||||||| |    
T  3934960 tagatatttctagtttgtaatggagagccttcctagaatagtataaataaggctcaccatctagtgttttggatactcaagcataatcaagcattgaatc 3935059  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  3935060 attcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 3935138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 8414662 - 8414490
Alignment:
Q  16 ttctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaagcattcaa 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||  |||||||||||| |||||||    
T  8414662 ttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagcatattcaagcattgaatcattcaa 8414563  T
Q  105 ataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  8414562 ataatataa-cttttctttgagaatattagagtgtttttctattttctctacctttccttttgtccctgagcca 8414490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 8731353 - 8731176
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||  ||||||| |   |||       ||||||||||||| ||    
T  8731353 tagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacatttaaagaatcaagcattgaatca 8731254  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  8731253 ttcaagtaatataa-cttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagcca 8731176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 18395337 - 18395501
Alignment:
Q  26 taatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catca------tcaagcattgaagcattcaaataatataatct 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||| |   ||| |      |||||||||||| ||||||| |||||||| ||    
T  18395337 taatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttagacacattaaaagagtcaagcattgaatcattcaagtaatataa-ct 18395435  T
Q  117 tttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccacttt 182  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||    
T  18395436 tttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagccacttt 18395501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 3052210 - 3052387
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgtttt-----------gcatcatcaagcattgaag 97  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           | ||  |||||||||||||    
T  3052210 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgatatactcaagtatactcaagcattgaag 3052309  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||||| | ||||||||||||||  | ||||||||| ||||||||||||| | |||||||||||| |||||    
T  3052310 cattcaaataatataaac-tttctttgagaata--atagagtttctttattttctctaccattccttttgtccctcagcca 3052387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 36464401 - 36464213
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg--------------------catcatcaa 88  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||  ||||    
T  36464401 tagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagatactcaagcatagtcaa 36464302  T
Q  89 gcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  36464301 gcattgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 36464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 16497049 - 16496953
Alignment:
Q  81 atcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||||| |||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16497049 atcatcaagcattgaatcatttaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 16535231 - 16535135
Alignment:
Q  81 atcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||||| |||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  16535231 atcatcaagcattgaatcatttaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 16630431 - 16630527
Alignment:
Q  81 atcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||||| |||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  16630431 atcatcaagcattgaatcatttaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 19786769 - 19786839
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg 79  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786769 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg 19786839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 19789178 - 19789272
Alignment:
Q  84 atcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||  |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  19789178 atcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 19789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 19786872 - 19786964
Alignment:
Q  84 atcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagc 176  Q
    |||||||||||||  |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19786872 atcaagcattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagc 19786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 19789075 - 19789145
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg 79  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19789075 tagatatttctagtttgtaatggagagccttactagagtagtataaataaggctcaccacctagtgttttg 19789145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 21769220 - 21769071
Alignment:
Q  34 agccttcctagagtagtataaataaggctcaccacctagtgttttgcat-------cat-caagcattgaagcattcaaataatataatcttttctttga 125  Q
    |||||| |||||||||||||||||||||||| ||||  |||||| ||||       ||| ||||||||||| |||||||||||||  | |||| ||||||    
T  21769220 agccttactagagtagtataaataaggctcatcaccctgtgtttggcatattcaagcattcaagcattgaaacattcaaataataacaacttt-ctttga 21769122  T
Q  126 gaatattagagagtttctctattttctctaccttcccttttgtccctgagc 176  Q
    |||||||| ||||||||||||||||||||||||| |||||  |||||||||    
T  21769121 gaatattaaagagtttctctattttctctacctttcctttcatccctgagc 21769071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 28610418 - 28610350
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttt 77  Q
    |||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  28610418 tagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccaccaagtgttt 28610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 19093903 - 19093846
Alignment:
Q  117 tttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagc 176  Q
    ||||||||||||||||||||||||  ||||||||||||||||  ||||||| ||||||||    
T  19093903 tttctttgagaatattagagagtt--tctattttctctacctctccttttgaccctgagc 19093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 42680808 - 42680862
Alignment:
Q  124 gagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||| |||||||||||||||||||||| | |||||| ||| |||||    
T  42680808 gagaatattagagtgtttctctattttctctacctttcattttgttcctcagcca 42680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 1622 - 1801
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||     
T  1622 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactcaagcatcatcaagcattgaat 1721  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  1722 cattcaagtaatataa-cttttctttgaggatattagagtgtttctctattttctctacctttccttttgtccctgagcca 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 4530841 - 4531020
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||     
T  4530841 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagcattgaat 4530940  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  4530941 cattcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4531020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 4533138 - 4533317
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||     
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccacctagtgttttggcatactgaagcatcatcaagcattgaat 4533237  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  4533238 cattcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4533317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 18966289 - 18966221
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttt 77  Q
    |||||| |||||||  || |||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  18966289 tagatatttctagtgtgtcatggagtgtcttcctagagtagtataaataaggctcaccaccaagtgttt 18966221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 31660 - 31830
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgt-tttgcatcatcaagcattgaagcattcaaata 107  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||  |||||||||| ||||||||||||    
T  31660 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccaccaagtgtgtaggcatactcaagcattgtagcattcaaata 31759  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccac 179  Q
    ||| |    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  31760 ata-acaaatttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgagccac 31830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 29345 - 29514
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaata 107  Q
    |||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||  | | |||  ||||||||||||||||| |||||    
T  29345 tagatatttttagtttgtaatggagagtcttcctagagtagtataaataaggctcaccaccaagtgcgtaggcatactcaagcattgaagcatttaaata 29444  T
Q  108 atataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||  | |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29445 ataacaacttt-ctttgagaacattagagagtttctctattttctctacctttccttttgtccctgagcca 29514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 24519332 - 24519153
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg-----------catcatcaagcattgaag 97  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||           ||| |||||||||||||     
T  24519332 tagatatttctagtttataatggagagccttcctagagtagtataaataaggctcaccatctagtgttttggcatactgaagcataatcaagcattgaat 24519233  T
Q  98 cattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24519232 cattcaagtaatataa-cttttcttagagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 24519153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 4879326 - 4879509
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc----------atcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||           || |||||||||||||      
T  4879326 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatg 4879425  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccactttg 183  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||    
T  4879426 attcaagtaatataa-cttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccagtttg 4879509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 4876998 - 4877176
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc----------atcatcaagcattgaagc 98  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||           || |||||||||||||      
T  4876998 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccatctagtgttttgacatactcaagataatcaagcattgaatg 4877097  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  4877098 attcaagtaatataa-cttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 36379644 - 36379465
Alignment:
Q  10 agataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctag-tgttttgc----------atcatcaagcattgaagc 98  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||           || |||||||||||||      
T  36379644 agatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctgggtgttttggcatactcaagataatcaagcattgaatg 36379545  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  36379544 attcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 36379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 36377359 - 36377181
Alignment:
Q  10 agataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccaccta-gtgttttgc----------atcatcaagcattgaagc 98  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           || |||||||||||||      
T  36377359 agatatttctactttgtaatggagagccttcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaaaataatcaagcattgaatg 36377260  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||    
T  36377259 attcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttcc-tttgtccttgagcca 36377181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 21268308 - 21268120
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttgc-------------------atcatcaag 89  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |                    || ||||||    
T  21268308 tagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcactacctagtgtttaggcataatccaaatactcaagataatcaag 21268209  T
Q  90 cattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||  |||||| ||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  21268208 cattgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 21268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 31486890 - 31487069
Alignment:
Q  10 agataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccaccta-gtgttttgc----------atcatcaagcattgaagc 98  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           || |||||||||||||      
T  31486890 agatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattgaatg 31486989  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  31486990 attcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 31487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 8995210 - 8995076
Alignment:
Q  38 ttcctagagtagtataaataaggctcaccacctagtgttttgcatca-tcaagcattgaagcattcaaataatataatcttttctttgagaatattagag 136  Q
    |||||||||||||||||||||||||| ||||| ||||||||| |  | |||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  8995210 ttcctagagtagtataaataaggctctccaccaagtgttttgtaatactcaagcattgaatcattcaagtaatataa-cttttctttgagaatattagag 8995112  T
Q  137 agtttctctattttctctaccttcccttttgtccct 172  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8995111 agtttctctattttctctacctttccttttgtccct 8995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 42275733 - 42275556
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||| |   |||       |||||| |||||| ||    
T  42275733 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagtattgaatca 42275634  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42275633 ttcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 42277959 - 42277782
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttttg---catc------atcaagcattgaagca 99  Q
    |||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||  ||||||| |   |||       ||||||||||||| ||    
T  42277959 tagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccactaagtgtttaggcacattcaaagaatcaagcattgaatca 42277860  T
Q  100 ttcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42277859 ttcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 31489174 - 31489353
Alignment:
Q  10 agataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccaccta-gtgttttgc----------atcatcaagcattgaagc 98  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||           || |||||||||||||      
T  31489174 agatatttctagtttgtaatggagagccttcctaaagtagtataaataaggctcaccacctaagtgttttggcatactcaagataatcaagcattgaatg 31489273  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||| ||||||||  ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  31489274 attcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagcca 31489353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 23860009 - 23860187
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttt-------tgc---atcatcaagcattgaagc 98  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||       | |   ||  |||||||||||| |    
T  23860009 tagataattctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccaccaagtgtttacgtatattcaagatactcaagcattgaaac 23860108  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||| ||||||||  ||| |||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||    
T  23860109 atttaaataataatatc-tttctttgagaatattagagagtttctctattttctatgcttttccttttgtccctgagcca 23860187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 5164244 - 5164151
Alignment:
Q  84 atcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5164244 atcaagcattgaagcattcaagtaatataa-cttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 5164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 34576769 - 34576612
Alignment:
Q  9 tagataattctagttggtaatggagagccttccta-gagtagtataaataaggctcaccacctagtgttttg-catcatcaagcattgaagcattcaaat 106  Q
    |||||| |||||||| |||||| |||||||||||| || ||||||||||||||||||||| | ||||||| | |||  | ||| ||| ||||||||||||    
T  34576769 tagatatttctagtttgtaatgtagagccttcctaagattagtataaataaggctcaccatcaagtgtttaggcat--tgaagaattcaagcattcaaat 34576672  T
Q  107 aatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtcc 170  Q
    |||||     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34576671 aatat----ctttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 29801985 - 29802152
Alignment:
Q  8 gtagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacctagtgttt-tgcatcatcaagcattg--------aagc 98  Q
    ||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||  ||||  ||||||||||        ||||    
T  29801985 gtagatatttctagtttgtaatggggagtcttcctagagtagtataaataaggctcaccaccaagtgtttaggcatagtcaagcattgaagaattcaagc 29802084  T
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgt 168  Q
    ||||||||||||  ||||||  |||||||||||||||||||||  |||||||||||||||| | ||||||    
T  29802085 attcaaataataatatcttt--tttgagaatattagagagttttactattttctctacctttcattttgt 29802152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 15729975 - 15730093
Alignment:
Q  54 aataaggctcaccacctagtgttttgcatcatca-agcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttct 152  Q
    |||||||||||||||| ||||| | | ||  ||| | ||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15729975 aataaggctcaccaccaagtgtgtagaatactcatatcattgaatcattcaagtaatataa-cttttatttgagaatattagagagtttctctattttct 15730073  T
Q  153 ctaccttcccttttgtccct 172  Q
    ||||||| ||||||||||||    
T  15730074 ctacctttccttttgtccct 15730093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 39816151 - 39816089
Alignment:
Q  116 ttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 39816089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 88433 - 88531
Alignment:
Q  79 gcatcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  88433 gcatcatcaaacattgaatcattcaagtaatataa-cttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgagcca 88531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 20642221 - 20642359
Alignment:
Q  37 cttcctagagtagtataaataaggctcaccacctagtgttttgcatcatcaagcattgaagcattcaaataatataatcttttctttgagaatattagag 136  Q
    ||||||| |||||||||||||||||||| || | ||||| | | ||  |||||||||||||||||||||||| |  ||  ||||||||||||||||||||    
T  20642221 cttcctacagtagtataaataaggctcatcatcaagtgtgtaggatagtcaagcattgaagcattcaaataaaaatat-atttctttgagaatattagag 20642319  T
Q  137 agtttctctattttctctaccttcccttttgtccctgagc 176  Q
    | ||||||||||||||||||||| | ||||||||||||||    
T  20642320 aatttctctattttctctacctttcattttgtccctgagc 20642359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 21199314 - 21199374
Alignment:
Q  9 tagataattctagttggtaatggagagccttcctagagtagtataaataaggctcaccacc 69  Q
    |||||| |||||||| |||||| | ||||||||| ||||| ||||||||||| ||||||||    
T  21199314 tagatatttctagtttgtaatgtacagccttcctggagtactataaataaggttcaccacc 21199374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 46 - 140
Alignment:
Q  84 atcaagcattgaagcattcaaataatataatcttttc-tttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||| ||||||| |||||||| |||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  46 atcaagcattgaatcattcaagtaatataa-cttttcgtttgagaatattaaagtgtttctctattttctctacctttccttttgtccctgagcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 3785 - 3707
Alignment:
Q  99 attcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 178  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  3785 attcaaataatataaacttt-ctttgagaatattagagagttactctattttctctacctttccttttgtccctgagcca 3707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University