View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_high_9 (Length: 476)
Name: NF20460_high_9
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 48565225 - 48565444
Alignment:
| Q |
1 |
atgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaacttataaaaactaaacattt |
100 |
Q |
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| T |
48565225 |
atgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaacttataaaaactaaacattt |
48565324 |
T |
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| Q |
101 |
gatgacttctgcatgctaactaacataagtctttttcatttaatctgagttatttaaataccgctagtgaatttccgagatttctacagtctagtctaac |
200 |
Q |
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| T |
48565325 |
gatgacttctacatgctaactaacataagtc-ttttcatttaatctgag----ttaaataccgctagtgaatttccgagatttctacagtctagtctaac |
48565419 |
T |
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| Q |
201 |
catgatgaccaaaggcttattctat |
225 |
Q |
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| T |
48565420 |
catgatgaccaaaggcttattctat |
48565444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 48567921 - 48568026
Alignment:
| Q |
371 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccaagcatatttgaaagcctcaa |
470 |
Q |
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| T |
48567921 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccgagcatatttgaaagcctcaa |
48568020 |
T |
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| Q |
471 |
gagagt |
476 |
Q |
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|||||| |
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| T |
48568021 |
gagagt |
48568026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 48565488 - 48565548
Alignment:
| Q |
237 |
tgagggatgggaaattgaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
297 |
Q |
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| T |
48565488 |
tgaggtatgggaaattgaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
48565548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 375
Target Start/End: Original strand, 48565571 - 48565601
Alignment:
| Q |
345 |
tatgtcactggttcgtcctctcttcacaagg |
375 |
Q |
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| T |
48565571 |
tatgtcactggttcgtcctctcttcacaagg |
48565601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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