View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_10 (Length: 458)
Name: NF20460_low_10
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 29840257 - 29840671
Alignment:
| Q |
20 |
aaaaatatatgatgaaataaacgacttgaaattatatattcatcacaataatnnnnnnnntctaacctcaattcttccttcctattggaaatcaaagtct |
119 |
Q |
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| T |
29840257 |
aaaaatatatgataaaataaacgacttggaattatatattcatcacaataataaaaaaaatctaacctcaattcttc----ctattggaaatcaaagtct |
29840352 |
T |
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| Q |
120 |
ataggtgatgtaaactaaagtgactaatgttctttttcaagggtggaaaagtgtattttaaatcaatataccttcctatttacatggcttgttatattac |
219 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29840353 |
ataggtgatgtaagctaaagtgactaatgttatttttcaagggtggaaaagtgtattttaaatcaatataccttcctatttgcatggcttgttatattac |
29840452 |
T |
|
| Q |
220 |
caaaatctattaagttcaattaccctatatcgcctcaagaggatttacactattcatatgtttcaaaattcttgttcaatcttatagtttcaacttcaac |
319 |
Q |
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| T |
29840453 |
caaaatctattaagttcaattaccctatatcgcctcaagaggatttacactattcatatgtttcaaaattcttgttcaatcttatagtttcaacttcaaa |
29840552 |
T |
|
| Q |
320 |
cttcacctttcagttcatcggttgatgcctataatatttcttgagcacaatgatattgaattaaattattatgaagttccagaacaagaagaaagtattg |
419 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29840553 |
cttcacctttcagttcattggttgatgcctataatatttcttgagcacaataatattgaattaaattattatgaagttccagaacaaaaagaaagtattg |
29840652 |
T |
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| Q |
420 |
gaattatggtgtcattaga |
438 |
Q |
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| T |
29840653 |
gaattatggtgtcattaga |
29840671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 166 - 400
Target Start/End: Complemental strand, 2210876 - 2210643
Alignment:
| Q |
166 |
aaaagtgtattttaaatcaatataccttcctatttacatggcttgttatattaccaaaatctattaagttcaattaccctatatcgcctcaagaggattt |
265 |
Q |
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|||| ||||| ||||| ||||||| | | ||| || ||||| |||||||||||| ||||| ||| ||||||||||||||||||| ||| |||| ||||| |
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| T |
2210876 |
aaaattgtatcttaaaccaatatagccttctagtttcatgg-ttgttatattactaaaattcatttagttcaattaccctatatcaccttaagacgattt |
2210778 |
T |
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| Q |
266 |
acactattcatatgtttcaaaattcttgttcaatcttatagtttcaacttcaaccttcacctttcagttcatcggttgatgcctataatatttcttgagc |
365 |
Q |
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| T |
2210777 |
agaccattttcaagtttcaaaactcttgttcaatcttatagttctagcaccgaactacaccttgcggtttatcggttgatgcctaaaatatttcttgagc |
2210678 |
T |
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| Q |
366 |
acaatgatattgaattaaattattatgaagttcca |
400 |
Q |
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| T |
2210677 |
acaataaaattgaattagattagtttgaagttcca |
2210643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 363
Target Start/End: Original strand, 32476421 - 32476544
Alignment:
| Q |
240 |
taccctatatcgcctcaagaggatttacactattcatatgtttcaaaattcttgttcaatcttatagtttcaacttcaaccttcacctttcagttcatcg |
339 |
Q |
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||||| ||||| ||||||||| ||||| |||||| |||||||||||| ||||||| | |||||||||| |||| |||||||||| ||||| | | || |
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| T |
32476421 |
tacccaatatcacctcaagagaatttagactattgttatgtttcaaaactcttgtttagtcttatagttccaacatcaaccttcaactttcgttacctca |
32476520 |
T |
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| Q |
340 |
gttgatgcctataatatttcttga |
363 |
Q |
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|||||||||| |||||||||||| |
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| T |
32476521 |
attgatgcctaaaatatttcttga |
32476544 |
T |
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