View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_11 (Length: 454)
Name: NF20460_low_11
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 34958189 - 34957864
Alignment:
| Q |
19 |
acaaggatgctcatgcttcttgaaattataattatccaaaccaatattgaaaagatagaaactcaccaaaggtatcattggctctggatacaaaagcaca |
118 |
Q |
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| T |
34958189 |
acaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctctggatacaaaagcaca |
34958090 |
T |
|
| Q |
119 |
cataagcnnnnnnntatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcaccccccaaacggatccatcagct |
218 |
Q |
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| T |
34958089 |
cataagcaaaaaa-tatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgcccctcaaacggatccatcagct |
34957991 |
T |
|
| Q |
219 |
tcaaatggaatggacttcacaagttccactgcttcatttagttttccggatttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgat |
318 |
Q |
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|||||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957990 |
tcaaatggaatggaattcataagttccaccgcttcatttagtttccctaatttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgat |
34957891 |
T |
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| Q |
319 |
tccaaacttttcccccattgtttcaaa |
345 |
Q |
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| T |
34957890 |
tccaaacttttcctccattgtttcaaa |
34957864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 34957867 - 34957795
Alignment:
| Q |
367 |
caaaccagagtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacacaatctttaagcat |
439 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34957867 |
caaactagcgtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacgcaatctttaagcat |
34957795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 150 - 439
Target Start/End: Original strand, 50131576 - 50131868
Alignment:
| Q |
150 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcaccccccaaacggatccatcagcttcaaatggaatggacttcacaagttccactg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatggaatggaattcacaagctccactg |
50131675 |
T |
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| Q |
250 |
cttcatttagttttccggat-ttccaaggatatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcccccattgtttcaaaata |
348 |
Q |
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| T |
50131676 |
cttcatttagtttccctgatcttccaaggagatcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaaata |
50131775 |
T |
|
| Q |
349 |
ttgtttcccctcatttaccaaaccagagtgattgcatgtacagagaacac--actaatgtaatatggtttggtgacacacaatctttaagcat |
439 |
Q |
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|||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50131776 |
ttgtttcccctcatttaccaaaccagcatgattacatgcacagagaacactgactaatgtaatatggtttggtgacacacaatctttaagcat |
50131868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 3922452 - 3922558
Alignment:
| Q |
19 |
acaaggatgctcatgcttcttgaaattataattatccaaaccaatattgaaaagatagaaactcaccaaaggtatcattggctctggatacaaaagcaca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922452 |
acaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctctggatacaaaagcaca |
3922551 |
T |
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| Q |
119 |
cataagc |
125 |
Q |
| |
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||||||| |
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| T |
3922552 |
cataagc |
3922558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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