View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_13 (Length: 436)
Name: NF20460_low_13
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 25 - 432
Target Start/End: Original strand, 48936177 - 48936586
Alignment:
| Q |
25 |
cataattataatagaacatgataaatgcattctgactatttttacctctgtcagcaccaccaaaacaattttattgactacattatcagattgtattatt |
124 |
Q |
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| T |
48936177 |
cataattataatagaacatgataaatgcattctgactatttttacctctgtcagcaccaccaaaacaattttattgactacattttcagattgtattatt |
48936276 |
T |
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| Q |
125 |
cattggagataaattacatttatacttgtgatataatcgcgtaaaca--aagctgatgattagaaacccaaaagctaataaattatcagcattactatta |
222 |
Q |
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| T |
48936277 |
cattggagatagattacatttatacttgtgatataatcgcgtaaacataaagctgatgattagaaacccaaaagctaataaattatcagcattactatta |
48936376 |
T |
|
| Q |
223 |
acagaagcaaatgaaaagttctaactaactgatttatcctattttggtgttacctctcaacatacccccttactaaggtgtttccacagataaacgacga |
322 |
Q |
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| T |
48936377 |
acagaagcaaatgaaaagttctagctaactgatttatcctattttggtgttacctctcaacataccccctttctaaggtgtttccacagataaacgacga |
48936476 |
T |
|
| Q |
323 |
atgattccttacgattgataaaaagatggtataagaaattcttggacattatgattgatagaaggatttcataatagcccatatgaagctgtgtctagtt |
422 |
Q |
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| T |
48936477 |
atgattccttacgattgataaaatgatggtataagaaattcttggccattatgattgatagaaggatttcataatagtccatatgaagctgtgtctagtt |
48936576 |
T |
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| Q |
423 |
tcatctctgt |
432 |
Q |
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| T |
48936577 |
tcatgtctgt |
48936586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 36969481 - 36969366
Alignment:
| Q |
19 |
aatcaacataattataatagaacatgataaatgcattctgactatttt-----tacctctgtcagcaccaccaaaacaattttattgactacattatcag |
113 |
Q |
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| T |
36969481 |
aatcaacataattataatagaacctgataaaggaattctgactattttatttttacttctttcagcaccaccaaaacaattttattgactacattatcag |
36969382 |
T |
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| Q |
114 |
attgtattattcattg |
129 |
Q |
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| T |
36969381 |
attgtattattcattg |
36969366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 47108999 - 47109067
Alignment:
| Q |
61 |
tatttttacctctgtcagcaccaccaaaacaattttattgactacattatcagattgtattattcattg |
129 |
Q |
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| T |
47108999 |
tatttttacatctttcagcaccaccaaaacaattttattgactacattatcagattgtattattcattg |
47109067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 47109508 - 47109474
Alignment:
| Q |
94 |
tttattgactacattatcagattgtattattcatt |
128 |
Q |
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| T |
47109508 |
tttattgactacattatcagattgtattattcatt |
47109474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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