View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_15 (Length: 409)
Name: NF20460_low_15
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 48143815 - 48144191
Alignment:
| Q |
19 |
gaaggttcatatagtattgtgcttattacatcgttatacccaaaatgcattttaattagtgccctccccacatccccaattcattgtccnnnnnnn-cat |
117 |
Q |
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| T |
48143815 |
gaaggttcatatagtattgtgcttattacatcgttatacccaaaatgcattttaattagtgccctccccatatccccaattcattgtctaaaaaaaacat |
48143914 |
T |
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| Q |
118 |
catatcgtttttctttcacattgtttcccttcgttttaaaaaattataaaaaccaatgtttacacttattacatgctagttactgaggataaatagtaac |
217 |
Q |
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| T |
48143915 |
catatcgtttttctttcacattgtttcccttcgttttaaaaaattataaaaaccaatgtttacacttattacatgct-gttactgaggataaatagtaac |
48144013 |
T |
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| Q |
218 |
tcactaataaagcaaaagaagcacaaaaaggctaacagagtacaccaaacttgtgatagagaacataaacctcgtaacaagaaatccacaacaggaacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48144014 |
tcactaataaagcaaaagaagcacaaaaaggctaacatagtacaccaaacttgtgatagagaacataaacctcgtaacaagaaatccacaactggaacaa |
48144113 |
T |
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| Q |
318 |
caatattttaatccataatggcctcaatgaaatcagcaccgaccaactgaagtaggacactgcatgcatcagtataat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48144114 |
caatattttaatccataatggcctcaatgaaatcagcaccgaccaactgaagtaggacactgcatgcatatgtataat |
48144191 |
T |
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