View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_18 (Length: 391)
Name: NF20460_low_18
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 185 - 375
Target Start/End: Original strand, 1984635 - 1984825
Alignment:
| Q |
185 |
tcattgcttgatctaaacaaggaaaaggacctctttgtatgaatatgatcagttcctttgcttattgggaggagccatgaaacacagtttcttcagctta |
284 |
Q |
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| T |
1984635 |
tcattgcttgatctaaacaaggaaaaggacctctctgtatgaatatgatcagttcctttgctttttgggaggagccatgaaacacagtttcttcagctta |
1984734 |
T |
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| Q |
285 |
tggtgatctgcttggcccaagtaacaaagttcattagttacaagtattattttttaagcagttattacacataatatgacatggcttaaat |
375 |
Q |
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| T |
1984735 |
tggtgatctgcttggcccaagtaacaaagttcattagttacaagtattattttttaagcagttattacacataatatgacatggcttaaat |
1984825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 6920274 - 6920354
Alignment:
| Q |
213 |
acctctttgtatgaatatgatcagttcctttgcttattgggaggagc-catgaaacacagtttcttcagcttatggtgatc |
292 |
Q |
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| T |
6920274 |
acctctttgtatgagcatgatcagttcctttgcttattgggaggagcagataaaacacaatttctttagcttatggtgatc |
6920354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 6934130 - 6934193
Alignment:
| Q |
230 |
tgatcagttcctttgcttattgggaggagcca-tgaaacacagtttcttcagcttatggtgatc |
292 |
Q |
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| T |
6934130 |
tgatcagtacctttgcttattgggaggagcaaatgaaacacagtttcttcagcttatggtgatc |
6934193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 6953441 - 6953524
Alignment:
| Q |
210 |
aggacctctttgtatgaatatgatcagttcctttgcttattgggaggagc-catgaaacacagtttcttcagcttatggtgatc |
292 |
Q |
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| T |
6953441 |
aggacctctttgtatgagcttgatcaattcctttgcttattgggaggagcagatgaaacaaaatttctttagcttatggtgatc |
6953524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 6944474 - 6944590
Alignment:
| Q |
210 |
aggacctctttgtatgaatatgatcag--ttcctttgcttattgggaggagcc-atgaaacacagtttcttcagcttatggtgat-ctgcttggccc--a |
303 |
Q |
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| T |
6944474 |
aggacctctttatatgagcatgatcagagtgcctttgcttattaggatgagcagatgaaaaactgtttcttcagcttatggtgatcctgcttggtccaaa |
6944573 |
T |
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| Q |
304 |
agtaacaaagttcatta |
320 |
Q |
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| T |
6944574 |
agtaacaaagttgatta |
6944590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 6953385 - 6953422
Alignment:
| Q |
169 |
ggataagcagcctgcttcattgcttgatctaaacaagg |
206 |
Q |
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| T |
6953385 |
ggatatgcagcctgcttcattgcttgatctaaacaagg |
6953422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 6934258 - 6934296
Alignment:
| Q |
337 |
tttaagcagttattacacataatatgacatggcttaaat |
375 |
Q |
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| T |
6934258 |
tttaaacagttattatacataatatgacatggcttaaat |
6934296 |
T |
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