View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20460_low_19 (Length: 362)

Name: NF20460_low_19
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20460_low_19
NF20460_low_19
[»] chr4 (9 HSPs)
chr4 (1-358)||(24543857-24544215)
chr4 (184-231)||(715546-715593)
chr4 (184-231)||(752872-752919)
chr4 (196-231)||(12895215-12895250)
chr4 (196-231)||(29205551-29205586)
chr4 (182-231)||(19482748-19482797)
chr4 (182-231)||(23292927-23292976)
chr4 (182-234)||(3947699-3947751)
chr4 (182-230)||(22440559-22440607)
[»] chr7 (5 HSPs)
chr7 (84-218)||(18215151-18215285)
chr7 (196-231)||(24339736-24339771)
chr7 (196-231)||(32093955-32093990)
chr7 (197-231)||(20549875-20549909)
chr7 (182-231)||(5409772-5409821)
[»] chr5 (3 HSPs)
chr5 (86-141)||(14674231-14674285)
chr5 (180-231)||(2436978-2437029)
chr5 (195-231)||(22423765-22423801)
[»] chr1 (7 HSPs)
chr1 (163-231)||(2218276-2218346)
chr1 (163-231)||(46940749-46940815)
chr1 (163-228)||(48040418-48040483)
chr1 (196-231)||(9630562-9630597)
chr1 (87-141)||(46348426-46348479)
chr1 (182-231)||(19562557-19562605)
chr1 (195-231)||(22947812-22947848)
[»] chr3 (6 HSPs)
chr3 (180-230)||(25775574-25775624)
chr3 (182-231)||(40052381-40052430)
chr3 (182-231)||(25074864-25074913)
chr3 (195-231)||(4990913-4990949)
chr3 (183-231)||(34185053-34185101)
chr3 (86-141)||(40052295-40052348)
[»] chr2 (6 HSPs)
chr2 (85-141)||(37558938-37558993)
chr2 (196-231)||(10535686-10535721)
chr2 (182-231)||(26769591-26769640)
chr2 (182-231)||(37419823-37419872)
chr2 (182-231)||(42511323-42511372)
chr2 (183-231)||(15909571-15909619)
[»] scaffold0793 (1 HSPs)
scaffold0793 (184-231)||(4822-4869)
[»] chr6 (5 HSPs)
chr6 (182-231)||(17327591-17327640)
chr6 (196-233)||(17341620-17341657)
chr6 (182-231)||(28152167-28152216)
chr6 (183-231)||(9107300-9107348)
chr6 (85-141)||(17841632-17841687)
[»] scaffold0004 (1 HSPs)
scaffold0004 (195-231)||(92904-92940)
[»] chr8 (2 HSPs)
chr8 (86-141)||(22595950-22596010)
chr8 (85-141)||(36450797-36450852)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 24543857 - 24544215
Alignment:
Q  1 ctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattgattttcacttatactattcctatgaagcacggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24543857 ctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattgattttcacttatactattcctatgaagcatggat 24543956  T
Q  101 gcagacaccgaacactgacactccgacacagctaataatttnnnnnnnntcacttaatgcattgtaattacaagtgtcggt-cgtgtccgatacatggac 199  Q
     | ||||||  |||||||||| |||||||| ||||||||||         ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  24543957 acggacaccagacactgacacgccgacacaactaataatttaaaaaaatacacttaatgcattgtaattacaagtgtcggtgcgtgtccgacacatggac 24544056  T
Q  200 acgcctaatccgaggagtgctcgtgcttcataatactgtatattctaatggatctatcttagatgatcattacacttattccatttagtttagcnnnnnn 299  Q
    | |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||          
T  24544057 atgcctaatccgaggagtgctcatgcttcataatacggtatattctaatggacctatcttagatgatcattacacttattccatttagtttagcttttta 24544156  T
Q  300 nnnnnnnactactgttaattttgaacaatatgaaacaaaaatattgtttcttctctctc 358  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24544157 tttttttactactgttaattttgaacaatatgaaacaaaaatattgtttcttctctctc 24544215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 715593 - 715546
Alignment:
Q  184 tgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 752919 - 752872
Alignment:
Q  184 tgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 752872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 12895250 - 12895215
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12895250 ggacacgcctaatccgaggagtgttcgtgcttcata 12895215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 29205551 - 29205586
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29205551 ggacacgcctaatccgaggagtgttcgtgcttcata 29205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 19482748 - 19482797
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||| |||||||||||||||| ||||||||||||    
T  19482748 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 19482797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 23292976 - 23292927
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||||||||||||||||||||  |||||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 3947751 - 3947699
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcataata 234  Q
    ||||||||| ||  |||||| ||||||||||||||||  ||||||||||||||    
T  3947751 cgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcataata 3947699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 22440607 - 22440559
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcat 230  Q
    ||||||||| ||  |||||||||||||||||||||||  ||||||||||    
T  22440607 cgtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 18215285 - 18215151
Alignment:
Q  84 tcctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataatttnnnnnnnntcacttaatgcattgtaattacaagtgtcg--gt 181  Q
    |||||||||||||||||||||||| || ||||| |||| ||||| |||||||||||||        |||| ||||||| |||| ||||||||||||  ||    
T  18215285 tcctatgaagcacggatgcagaca-cggacactaacacgccgacgcagctaataattt-gaaaaaatcacataatgcagtgtagttacaagtgtcggtgt 18215188  T
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtg 218  Q
    ||||||||| ||  |||||||||||||| ||||||||    
T  18215187 cgtgtccgacaccgggacacgcctaatctgaggagtg 18215151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 24339736 - 24339771
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||||||||||||||||||||| |||||||||||    
T  24339736 ggacacgcctaatccgaggagtgcccgtgcttcata 24339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 32093990 - 32093955
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32093990 ggacacgcctaatccgaggagtgttcgtgcttcata 32093955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 20549875 - 20549909
Alignment:
Q  197 gacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| |||||||||||    
T  20549875 gacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 5409821 - 5409772
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||||||||||||||||||||  |||||||||||    
T  5409821 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 14674231 - 14674285
Alignment:
Q  86 ctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  14674231 ctatgaagcacggatacagacacgga-cactgacacgccgacacagctaataattt 14674285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 2436978 - 2437029
Alignment:
Q  180 gtcgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||| ||   |||||||||||||||||||||| ||||||||||||    
T  2436978 gtcgtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcata 2437029  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 22423801 - 22423765
Alignment:
Q  195 tggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||||  |||||||||||    
T  22423801 tggacacgcctaatccgaggagtgtccgtgcttcata 22423765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 2218276 - 2218346
Alignment:
Q  163 tgtaattacaagtgtcggt--cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||||||||||||||||  ||||||||| ||  |||||||||||||| ||||||||  |||||||||||    
T  2218276 tgtaattacaagtgtcggtgtcgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcata 2218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 46940815 - 46940749
Alignment:
Q  163 tgtaattacaagtgtcggtcgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||| |||  ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  46940815 tgtaattacaagtttcg--cgtgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcata 46940749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 48040483 - 48040418
Alignment:
Q  163 tgtaattacaagtgtcggtcgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttc 228  Q
    ||||| |||||||||||||||||||||| ||  |||||||||||||  ||||||||  ||||||||    
T  48040483 tgtaaatacaagtgtcggtcgtgtccgacactgggacacgcctaattggaggagtgtccgtgcttc 48040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 9630597 - 9630562
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9630597 ggacacgcctaatccgaggagtgttcgtgcttcata 9630562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 46348479 - 46348426
Alignment:
Q  87 tatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    |||||||||||||| | ||||| || ||||||||| |||||||||||||||||||    
T  46348479 tatgaagcacggatacggacacgga-cactgacacgccgacacagctaataattt 46348426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 19562605 - 19562557
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||| |||||| |||||||||||||||| ||||||||||||    
T  19562605 cgtgtccgacacagggacacacctaatccgaggagtg-tcgtgcttcata 19562557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 22947812 - 22947848
Alignment:
Q  195 tggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||||  |||||||||||    
T  22947812 tggacacgcctaatccgaggagtgtccgtgcttcata 22947848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 25775574 - 25775624
Alignment:
Q  180 gtcgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcat 230  Q
    ||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  25775574 gtcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 40052381 - 40052430
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||||||||    
T  40052381 cgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcata 40052430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 25074864 - 25074913
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||| |||||||||||||||| ||||||||||||    
T  25074864 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 25074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 4990949 - 4990913
Alignment:
Q  195 tggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||||  |||||||||||    
T  4990949 tggacacgcctaatccgaggagtgtccgtgcttcata 4990913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 34185101 - 34185053
Alignment:
Q  183 gtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||||| ||  |||||||||||||||||||||||  |||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 40052295 - 40052348
Alignment:
Q  86 ctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    ||||||||||||||| | |||||   |||||||||| |||||||||||||||||||    
T  40052295 ctatgaagcacggatacggacacg--acactgacacgccgacacagctaataattt 40052348  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 37558938 - 37558993
Alignment:
Q  85 cctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    |||||||||||||||| | ||||| || ||||||||| |||||||||||||||||||    
T  37558938 cctatgaagcacggatacggacacgga-cactgacacgccgacacagctaataattt 37558993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 10535721 - 10535686
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10535721 ggacacgcctaatccgaggagtgttcgtgcttcata 10535686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 26769591 - 26769640
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||||||||||||||||||||  |||||||||||    
T  26769591 cgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 37419823 - 37419872
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  |||||||||||||||||||||||  |||||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 42511372 - 42511323
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||| ||||||| |||||||||||||||  |||||||||||    
T  42511372 cgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcata 42511323  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 15909619 - 15909571
Alignment:
Q  183 gtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||||| ||| ||||||||||||| ||| ||||| ||||||||||||    
T  15909619 gtgtccgacacagggacacgcctaattcgaagagtgttcgtgcttcata 15909571  T

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Target: scaffold0793 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 4869 - 4822
Alignment:
Q  184 tgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcata 4822  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 17327640 - 17327591
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||| || ||| |||||||||||||||||||||||  |||||||||||    
T  17327640 cgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcata 17327591  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 17341657 - 17341620
Alignment:
Q  196 ggacacgcctaatccgaggagtgctcgtgcttcataat 233  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  17341657 ggacacgcctaatccgaggagtgtttgtgcttcataat 17341620  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 28152167 - 28152216
Alignment:
Q  182 cgtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||| ||  ||||| ||||||||||||||||| ||||||||||||    
T  28152167 cgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcata 28152216  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 9107348 - 9107300
Alignment:
Q  183 gtgtccgatacatggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    |||||||| ||  |||||| ||||||||||||||||| |||||||||||    
T  9107348 gtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcata 9107300  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 17841687 - 17841632
Alignment:
Q  85 cctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    |||||||||||| ||| | ||||| || ||||||||| |||||||||||||||||||    
T  17841687 cctatgaagcactgatacggacacgga-cactgacacgccgacacagctaataattt 17841632  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 92904 - 92940
Alignment:
Q  195 tggacacgcctaatccgaggagtgctcgtgcttcata 231  Q
    ||||||||||||||||||||||||  |||||||||||    
T  92904 tggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 22595950 - 22596010
Alignment:
Q  86 ctatgaagcacggatgcagacaccg-----aacactgacactccgacacagctaataattt 141  Q
    ||||||||||||||| | |||||||     ||||||||||| |||||||||||||||||||    
T  22595950 ctatgaagcacggatacggacaccggacacaacactgacacgccgacacagctaataattt 22596010  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 36450852 - 36450797
Alignment:
Q  85 cctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 141  Q
    |||||||||||||||| | |||| || |||||||||| |||||||| ||||||||||    
T  36450852 cctatgaagcacggatacggaca-cggacactgacacgccgacacaactaataattt 36450797  T

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