View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20460_low_20 (Length: 355)

Name: NF20460_low_20
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20460_low_20
NF20460_low_20
[»] chr1 (5 HSPs)
chr1 (179-336)||(29001258-29001415)
chr1 (179-278)||(29006195-29006294)
chr1 (20-149)||(28999681-28999810)
chr1 (20-149)||(29006035-29006165)
chr1 (298-336)||(29006316-29006354)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 29001258 - 29001415
Alignment:
Q  179 gacttagttctccaaagtcttttcatctaaaatataagtggcaaacacatcatgaggacatgtttaaaagtttaagagaggagaggaggactttgaaact 278  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29001258 gacttagttctccaaagtcttttcatctaaaatacaagtggcaaacacatcatgaggacatgtttaaaagtttaagagaggagaggaggactttgaaact 29001357  T
Q  279 nnnnnnnnnnnnnnnnnnnggatcaaccgaaaataattgaaggttttgagaggagata 336  Q
                       |||||||||||||||||||||||||||||||||||||||    
T  29001358 aaaaaaaagaaagaaaaaaggatcaaccgaaaataattgaaggttttgagaggagata 29001415  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 29006195 - 29006294
Alignment:
Q  179 gacttagttctccaaagtcttttcatctaaaatataagtggcaaacacatcatgaggacatgtttaaaagtttaagagaggagaggaggactttgaaact 278  Q
    |||||||||||| |||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29006195 gacttagttctctaaagtcttttcatccaaaatacaactcgcaaacacatcatgaggacatgtttaaaagtttaagagaggggaggaggactttgaaact 29006294  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 28999681 - 28999810
Alignment:
Q  20 actttggtagaaatatatatatttgatatttnnnnnnnnnttaaaataacaatacgatattagatgtttctttgtcnnnnnnncaaacaagacattacat 119  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||       ||||||||| |||||||    
T  28999681 actttggtagaaatatatatatttgatatttaaaaaaaaattaaaataacaatacgatattagatgtttctttgtcaaaaaaacaaacaagatattacat 28999780  T
Q  120 gtttcatctcatgttcatctcttcattttt 149  Q
    ||||||||||||||||||||||| ||||||    
T  28999781 gtttcatctcatgttcatctcttaattttt 28999810  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 29006035 - 29006165
Alignment:
Q  20 actttggtagaaatatatatatttgatatttnnnnnnnnn-ttaaaataacaatacgatattagatgtttctttgtcnnnnnnncaaacaagacattaca 118  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||       ||||||||| ||||||    
T  29006035 actttggtagaaatatatatatttgatattttaaaaaaaaattaaaataacaatacgatattagatgtttctttgtcaaaaaaacaaacaagatattaca 29006134  T
Q  119 tgtttcatctcatgttcatctcttcattttt 149  Q
    |||||||||||||||||||||||||||||||    
T  29006135 tgtttcatctcatgttcatctcttcattttt 29006165  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 29006316 - 29006354
Alignment:
Q  298 ggatcaaccgaaaataattgaaggttttgagaggagata 336  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29006316 ggatcaaccgaaaataattgaaggttatgagaggagata 29006354  T

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