View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_25 (Length: 310)
Name: NF20460_low_25
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 46711107 - 46710965
Alignment:
| Q |
3 |
tctctcacctcatattatatagttttcaatgttaacctgctccttataacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatg |
102 |
Q |
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| T |
46711107 |
tctctcacctcatattatatagttttcaatgttaacctgctccttataacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatg |
46711008 |
T |
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| Q |
103 |
aatgtgtcaaattcggactttgaccaacatgaggattgagtag |
145 |
Q |
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| T |
46711007 |
aatgtgtcaaattcggactttgaccaacatgaggattgagtag |
46710965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 46710897 - 46710805
Alignment:
| Q |
213 |
atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatattcttcgacatc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
46710897 |
atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatattttttgacatc |
46710805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 35425698 - 35425556
Alignment:
| Q |
3 |
tctctcacctcatattatatagttttcaatgttaacctgctccttataacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425698 |
tctctcacctcatattatatagttttcaatgttaacctgctccttataacaactaagttaaagcatgtgtctgctatgtaaatataattacagctctatg |
35425599 |
T |
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| Q |
103 |
aatgtgtcaaattcggactttgaccaacatgaggattgagtag |
145 |
Q |
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| T |
35425598 |
aatgtatcaaattcggactttgaccaacatgaggattgagtag |
35425556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 35425488 - 35425406
Alignment:
| Q |
213 |
atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35425488 |
atccagcacatgaggtatttaagaaaaataaataccagtcttccgatcaaacaaactcaaccaataatattgtgttaaatatt |
35425406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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