View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_3 (Length: 686)
Name: NF20460_low_3
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 80 - 670
Target Start/End: Original strand, 16808522 - 16809110
Alignment:
| Q |
80 |
atacgagcatgtgtttaaggatataagttaacatttttcatttataactacttataaaatcgagaaggtgtttattgttttgaggaggtcgatcgaatca |
179 |
Q |
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| T |
16808522 |
atacgaacatgtgtttaaggatatatgttaacattttcaatttataactatttataaaatcgagaagatgtttattgttttgaggaggtcgatcgaatca |
16808621 |
T |
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| Q |
180 |
aacgagctataattaagtaaaactttattttatgtatttaatttggttataaaactaaaatattaaactagttttggnnnnnnnnntataatgatcaata |
279 |
Q |
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| T |
16808622 |
aatgagctataattaagtaaaactttattttatgtatttaatttggttataaaactaaaatattaaactagttttggaaaaaaa---ataatgatcaata |
16808718 |
T |
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| Q |
280 |
ccttcgaatctgttcttcattttatccttttagaagggttatataccttccattcgtgatgatgtgatacctttcctatttctatatcatagtcataagt |
379 |
Q |
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| T |
16808719 |
ccttcgaatctgttcttcattttatccttttagaagggttatataccttccattcgtgatgatgtgatacctttcctattcctatatcatagtcataagt |
16808818 |
T |
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| Q |
380 |
cgtaacacatgcatgtattaatatacctgttctttctgcttagcatttacttttaattgtctctattatggagaactaatggcttgtatttcaatctgtc |
479 |
Q |
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| T |
16808819 |
cgtaacacatgcatgtattaatatacatgttctttctgcttagcatttacttttaattgtctctattatggagaactaatggcttgtatttcaatctgtc |
16808918 |
T |
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| Q |
480 |
cataatgtggcatgcattggattggttaaaaatgctttgtcaaaagagataaggttaggctcagaatatcaaatttctggttattaaacactttgcaatt |
579 |
Q |
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| T |
16808919 |
cataatgtggcatgcattggattggtt-aaaatgctttgtcaaaagagataaggttaggctcagaatatcaaatttctggttattaaacactttgcaatt |
16809017 |
T |
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| Q |
580 |
c--caatagataaatattactccttcattattttgacatttggatatgaaggattttgttctccatgtttatattatttaatgcaccattcat |
670 |
Q |
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| T |
16809018 |
ccacaatagataaatattactccttcattattttgacatttggatatgaaggattttgttctccatgtttatattatttaatgcaccattcat |
16809110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 16808463 - 16808497
Alignment:
| Q |
20 |
gctattatatgtctcaaggatacgtgttaaggaat |
54 |
Q |
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| T |
16808463 |
gctattatatgtgtcaaggatacgtgttaaggaat |
16808497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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