View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_30 (Length: 257)
Name: NF20460_low_30
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 35376374 - 35376612
Alignment:
| Q |
18 |
gtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgttgatttaaattttcaaaattactatattagatatagggtttctaaattatgn |
117 |
Q |
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| T |
35376374 |
gtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgttgatttaaattttcaaaattactatattagatatagggtttctaaattatgt |
35376473 |
T |
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| Q |
118 |
nnnnnnactacaaaattaacataaaa---------attgaagtttagtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgt |
208 |
Q |
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| T |
35376474 |
ttttttactacaaaattaacagaaaaattgaaaaaattgaagtttagtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgt |
35376573 |
T |
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| Q |
209 |
gcattagcagcaatgaagacatcagaaccaatctctgtg |
247 |
Q |
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| T |
35376574 |
gcattagcagcaatgaagacatcagaaccaatctctgtg |
35376612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 35357942 - 35358031
Alignment:
| Q |
155 |
gtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctct |
244 |
Q |
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| T |
35357942 |
gtgcacataccaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatctct |
35358031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 35364971 - 35365068
Alignment:
| Q |
150 |
gtttagtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtg |
247 |
Q |
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| T |
35364971 |
gtttagtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttatgtgcagtaatagcaatgaagacatcagcaccaatctctgtg |
35365068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 35364624 - 35364658
Alignment:
| Q |
32 |
cacaacaagctatctttgatgtaacaaatcctgtt |
66 |
Q |
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| T |
35364624 |
cacaacaagctttctttgatgtaacaaatcctgtt |
35364658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 48085048 - 48084963
Alignment:
| Q |
159 |
acataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctct |
244 |
Q |
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| T |
48085048 |
acataccataagcttgagggttggtaatgtaatccatgtgcattctatatgcatcagcagcaacaaagatgtcagagccaatctct |
48084963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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