View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_31 (Length: 244)
Name: NF20460_low_31
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11536238 - 11535992
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgtttctagctgctgatggataggcaaggctatattgtgacatcatattcaaagaaataaaccgtagtttaa |
100 |
Q |
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| T |
11536238 |
tgtctatttgtttgtttcttttgctttttgtttctagctgctgatggatagacaaggctatattgtgacatcatattcaaagaaataaaccgtagtttaa |
11536139 |
T |
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| Q |
101 |
taacagtacatttgaattttgaagcagaagaatttattcttgtgtatgtatatacataataatgaggtatcacttggttaattg--------------at |
186 |
Q |
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| T |
11536138 |
taacagtacatttgaattttgaagcagaagaatttattcttgtgtatgtatatacataataatgaggtatcacttggttaattgatggagtaaaatgcat |
11536039 |
T |
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| Q |
187 |
gcattattgtagaaaatcatttaacaagttcctcttccttctctgct |
233 |
Q |
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| T |
11536038 |
gcattattgtagaaaatcatttaacaagttcctcttccttctttgct |
11535992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3848368 - 3848424
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgtttctagctgctgatggataggcaagg |
57 |
Q |
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| T |
3848368 |
tgtctatttgtctgcttcttttgctttttgtttctagctgctgatggacagacaagg |
3848424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2048971 - 2048926
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgtttctagctgctgatg |
46 |
Q |
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| T |
2048971 |
tgtctatttgtctgcttcttttgctttttgtttctagctgctgatg |
2048926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38836126 - 38836081
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgtttctagctgctgatg |
46 |
Q |
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| T |
38836126 |
tgtctatttgtctacttcttttgctttttgtttctagctgctgatg |
38836081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8308293 - 8308325
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgttt |
33 |
Q |
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| T |
8308293 |
tgtctatttgtttgcttcttttgctttttgttt |
8308325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40715933 - 40715886
Alignment:
| Q |
1 |
tgtctatttgtttgcttcttttgctgtttgtttctagctgctgatgga |
48 |
Q |
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| T |
40715933 |
tgtctatttgtctacttcttttgctttttgattctagctgctgatgga |
40715886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 33417406 - 33417359
Alignment:
| Q |
13 |
tgcttcttttgctgtttgtttctagctgctgatggataggcaaggcta |
60 |
Q |
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| T |
33417406 |
tgcttcttttgctttttgtttctagctgctgatgggcatgcaaggcta |
33417359 |
T |
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