View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_32 (Length: 237)
Name: NF20460_low_32
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 40207486 - 40207694
Alignment:
| Q |
18 |
gttttttcatcacaataattagttggaaatttttataaacctaactcttgttgattagtcttttatcagaacaaagatggttgacaagaatggtagcacg |
117 |
Q |
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| T |
40207486 |
gttttttcatcacaata-ttagttggaaatttttataaacctaactctggttgattagtcttttatcataacaaagatggttgacaagaatggtagcacg |
40207584 |
T |
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| Q |
118 |
aatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagtacttcgacgatgatggtcgcgtcaaaagaaccggtaattaagtattgt |
217 |
Q |
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| T |
40207585 |
aatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagtacttcgacgatgatggtcgcgtcaaaagaaccggtaattaagtattga |
40207684 |
T |
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| Q |
218 |
cttttatttt |
227 |
Q |
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| T |
40207685 |
cttttatttt |
40207694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 40203335 - 40203497
Alignment:
| Q |
50 |
ttataaacctaactcttgttgattagtcttttatcagaacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattga |
149 |
Q |
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| T |
40203335 |
ttataaacctaacttgggttaattagtcttttatcataacaaagatggttgaaaagaatggtagcacgaatcatcaccaaacatttgatgtctccattga |
40203434 |
T |
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| Q |
150 |
tcaacaaagagattctaagtacttcgacgatgatggtcgcgtcaaaagaaccggtaattaagt |
212 |
Q |
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| T |
40203435 |
tcaacaaagagattctaagtttttcgacgacgatggtcgtgtcaaacgaaccggtaattaagt |
40203497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 40199205 - 40199361
Alignment:
| Q |
71 |
attagtcttttatcagaacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagta |
170 |
Q |
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||||||| ||| ||| ||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
40199205 |
attagtcctttgtcataacaaagatggttgaaaagaacggaagcaagaatcatcaccaaacatttgatgtctccattgaccaacaaagagattccaagta |
40199304 |
T |
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| Q |
171 |
cttcgacgatgatggtcgcgtcaaaagaaccggtaattaagtattgtcttttatttt |
227 |
Q |
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| T |
40199305 |
cttcgacgatgatggtcgcatcaaaagaacaggtaattaagtattgtcttttatttt |
40199361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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