View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_4 (Length: 545)
Name: NF20460_low_4
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 3 - 531
Target Start/End: Original strand, 44634055 - 44634583
Alignment:
| Q |
3 |
ttgccttcgttgccattaaatacaaaacgtgaaactatggattgaaagcctttgccaaaccaaaagcagctgcggatgcaatggcgccgatgagagcagt |
102 |
Q |
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| T |
44634055 |
ttgccttcgttgccattaaatacaaaacgtgaaactatggattgaaagcctttgccaaaccaaaagcagctgcggatgcaatggcgccgatgagagcagt |
44634154 |
T |
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| Q |
103 |
ttcgaaagcacttttgataggtttgctgccggtgaagcatcccttgacaaagccaaagataagcaaagcaatcaatgtaaaaattactgaaaaaagaaca |
202 |
Q |
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| T |
44634155 |
ttcgaaagcacttttgataggtttgctgccggtgaagcatcccttgacaaagccaaagataagcaaagcaatcaatgtaaaaattactgaaaaaagaaca |
44634254 |
T |
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| Q |
203 |
gcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaatagcaattgtcattgcactgcacaatgctctcc |
302 |
Q |
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| T |
44634255 |
gcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaatagcaattgtcattgcactgcacaatgctctca |
44634354 |
T |
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| Q |
303 |
ttggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgttcaagcactcacgaaataatacattctt |
402 |
Q |
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| T |
44634355 |
ttggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgttcaagcactcacgaaataatacattctt |
44634454 |
T |
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| Q |
403 |
tcctcttctccaagaaagttatttaaacaaaaggtacacttgaataaacaattttgttaaaaaatgtgactccaagaacaagcaatgatgttaaaaatta |
502 |
Q |
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| T |
44634455 |
tcctcttctccaagaaagttatttaaacaaaaggtacacttgaataaacaattttgttaaaaaatgtgactccaagaacaagcaatgatgttaaaaatta |
44634554 |
T |
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| Q |
503 |
ctttgagagattcagttgcttgatattat |
531 |
Q |
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| T |
44634555 |
ctttgagagattcagttgcttgatattat |
44634583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 378
Target Start/End: Original strand, 44622605 - 44622948
Alignment:
| Q |
32 |
tgaaactatggattgaaagcctttgccaaaccaaaagcagctgcggatgcaatggcgccgatgagagcagtttcgaaagcacttttgataggtttgctgc |
131 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| || || |||||||| || || ||||||||||| |||||||| |||| || ||| ||| |
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| T |
44622605 |
tgaaactatggatggaaagcctttgccaaaccataagcagccgcagaggcaatggcaccaattagagcagtttccaaagcactcctgattggcttgttgc |
44622704 |
T |
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| Q |
132 |
cggtgaagcatcccttgacaaagccaaagataagcaaagcaatcaatgtaaaaattactgaaaaaagaacagcctctgatgcatttggaatgaacatgta |
231 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
44622705 |
cggtgaaggatcccttgacaaagccaaagataagcaaagcaatcaatgtaaccaccactgaaacaagaacagcctctgatgcatttcgaatgaacatgta |
44622804 |
T |
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| Q |
232 |
aggaatgagaggaacaattccacccaatatgtaagcaatagcaattgtcattgcactgcacaatgctctccttggatctggcttttctagtcccagctca |
331 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||| |||| |
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| T |
44622805 |
aggaatgagaggaacaattccacccaatacgtaagcaatagcaattgtcattgcactatacaatgctcttctcggatctggcttctctagtcccaactca |
44622904 |
T |
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| Q |
332 |
aatctgccatgccatcgagtaagcaatttgttaattaatttgttcaa |
378 |
Q |
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|| |||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
44622905 |
aacctgccacgcca---agtaaccaatttgttaattaatttgttcaa |
44622948 |
T |
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