View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_5 (Length: 541)
Name: NF20460_low_5
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 24 - 523
Target Start/End: Original strand, 40301757 - 40302255
Alignment:
| Q |
24 |
aaaatcatttgagataatcaaactatctaagctaaggcaagtaacattttcaagagatgatttgaagcgaataaaatagatcaaagtgaattaagaatgt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40301757 |
aaaatcatttgagataatcaaactatctaagctaaggcaagtaacattttcaagagatgatttgaagcgaataaaatagatcaaagtgaattaagaatgt |
40301856 |
T |
|
| Q |
124 |
ttacactttgaggaactctcgtctacacggaacaaatgagtttatgaatgtattgatttcaaagcttaagctaagccacattacaaacgttcgtcagata |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40301857 |
ttacactttgaggaactctcgtctacacggaacaaatgagtttatgaatgtattgatttcaaagcttaagctaagccacattacaaacgtttgtcagata |
40301956 |
T |
|
| Q |
224 |
cgaacatatacaatatcaacatcaatgccaatctactatacctccgagtgtggtggatcccaccccttcccacgcttcactggcccccaattcctcatta |
323 |
Q |
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| T |
40301957 |
cgaacatatacaatatcaacatcaatgccaatctactatacctccgagtgtggtggatcccaccccttcccacgcttcactggcccccaattcctcatta |
40302056 |
T |
|
| Q |
324 |
tcaacaccttccatgtcgtagtcccaccagccacgaccatttgcatctgctcgtaaaaaatattaagagtaacgatgaaaaattttcaaatgcaccctct |
423 |
Q |
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| T |
40302057 |
tcaacaccttccatgtcgtagtcccaccagccgcgaccatttgcatctgcttgtaaaaaatattaagagtgacgatgaaaaa-tttcaaatgcaccctct |
40302155 |
T |
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| Q |
424 |
ataacaaaatatatgtatagatgtaaatcatacagtgattataaggtttttgctttatgccattggagtcattttccgtccgcttttttggcttcaacct |
523 |
Q |
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| T |
40302156 |
ataacaaaatatatgtatagatgtaaatcatacagtgattataaggtttttgctttatgccattggagtcattttccgtccgcttttttggcttcaacct |
40302255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 361 - 520
Target Start/End: Original strand, 5538190 - 5538350
Alignment:
| Q |
361 |
catttgcatctgctcgtaaaaaatattaagagtaacgatga--aaaattttcaaatgcaccctctataa-caaaatatatgtatagatgtaaatcataca |
457 |
Q |
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||||||||||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
5538190 |
catttgcatctgctcgtaaaaaatatt--gagtgatggtgatgaaaattttcaaatgcaccctctataaacaaaatatatgtatagatgtaaatcaaatg |
5538287 |
T |
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| Q |
458 |
gtgattataaggtttttgctttatgccattggagtcattttccgtccgcttttttggcttcaa |
520 |
Q |
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| T |
5538288 |
gtgattgtaaggtttttgctttatgccattggaatcattttccgtccgtttttttggcttcaa |
5538350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 359 - 523
Target Start/End: Original strand, 25574192 - 25574358
Alignment:
| Q |
359 |
accatttgcatctgctcgtaaaaaatattaagagtaacgatga--aaaattttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcatac |
456 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25574192 |
accatttgcatctgctcgtaaaaaatattaagagtaatggtgatgaaaattttcaaatgcaccctctataacaaaatatatgtatagatgtaaatcaaat |
25574291 |
T |
|
| Q |
457 |
agtgattataaggtttttgctttatgccattggagtcattttccgtccgcttttttggcttcaacct |
523 |
Q |
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| T |
25574292 |
agtgattgtaaggtttttgctttatgccattggaatcattttccatccacttttttggcttcaacct |
25574358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 8047956 - 8048014
Alignment:
| Q |
465 |
taaggtttttgctttatgccattggagtcattttccgtccgcttttttggcttcaacct |
523 |
Q |
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|||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||| |
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| T |
8047956 |
taaggtttttcctttatgccattggagtcatttcccatcctcttttttggcttcaacct |
8048014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 8047898 - 8047947
Alignment:
| Q |
320 |
attatcaacaccttccatgtcgtagtcccaccagccacgaccatttgcat |
369 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
8047898 |
attatcaacaccttccatgtagtagtcccaccagccgcgaccatttgcat |
8047947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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