View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_6 (Length: 523)
Name: NF20460_low_6
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 519
Target Start/End: Original strand, 2114165 - 2114664
Alignment:
| Q |
20 |
aacatgagtccctcctgtgttgtttttcggtatcaaatcatacagatcttttccttcccaccattcctcttcactctcaagattatcaattatcaacaag |
119 |
Q |
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| T |
2114165 |
aacatgagtccctcctgtgttgtttttcggtatcaaatcatacagatcttttccttcccaccattcctcttcactctcaagattatcaattatcaacaag |
2114264 |
T |
|
| Q |
120 |
taaggtgtatcaccaaaaagctccctcttgattctcttgaatgcttcgagttcctgctcttcaaagctgcgaattcgacccctttcaatctcggaatcag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114265 |
taaggtgtatcaccaaaaagctccctcttgattctcttgaatgcttcgagttcctgctcttcaaagctgcgaattcgacccctttcaatctcggaatcag |
2114364 |
T |
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| Q |
220 |
caccaacatccaaaccgaaatttcgtgacaagttcaatatgttctgtctaaaattcctagcttcaccaccaatccacaaaaccatcttgtacctttggta |
319 |
Q |
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| T |
2114365 |
caccaacatccaaaccgaaatttcgtgacaagttcaatatgttctgtctaaaattcctagcttcaccaccaatccacaaaaccatcttgtacctttggta |
2114464 |
T |
|
| Q |
320 |
atatctatgagcaaattctaatgccaattcagattttccaattccagaaactccgctaatgcaaatcacactactactacacaaactcttgtagttgtag |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114465 |
atatctatgagcaaattctaatgccaattcagattttccaattccagaaactccgctaatgcaaatcacactactactacacaaactcttgtagttgtag |
2114564 |
T |
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| Q |
420 |
cttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatcatcggttgttcaatccaagcctctaaatttggttctctgctcctcc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
2114565 |
cttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatcatcggttgttcaatccaagcctctaaatttggttctttgttcctcc |
2114664 |
T |
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