View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_7 (Length: 499)
Name: NF20460_low_7
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 43 - 485
Target Start/End: Original strand, 7549036 - 7549477
Alignment:
| Q |
43 |
ggcattggccatgttttgggcttgggtgtcaagaagaccatgaatatgattaattagattatcatggaattgaggatgtgcttgtctaacattcacctca |
142 |
Q |
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| T |
7549036 |
ggcattagccatgttttgggcttgggtgtcaagaagaccatgaatatgattaattagattatcatggaattgaggatgtgcttgtctaacattcacctca |
7549135 |
T |
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| Q |
143 |
ccaccattttgcaatttatgttgcaagttcttctattgatagttctcaaggaaagctagttggatctttctatgatccctctgaacttccattacaacta |
242 |
Q |
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| T |
7549136 |
ccaccattttgcaatttatgttgcaagttcttctattaatagttctcaaggaaagctagttggatctttctatgatccctctgaacttccattactacta |
7549235 |
T |
|
| Q |
243 |
aagacctctcttgaagaaaactatcatacgatataatttattttataccaatgaaatgtctaccatagaactccaatcattagtatagtgatgatatttc |
342 |
Q |
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| T |
7549236 |
aagaccactcttgaagaaaactaccatatgatataattta-tttataccaatgaaatgtttagcatagaactccaatcattagtatagtgatgatatttc |
7549334 |
T |
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| Q |
343 |
aattggtttataacgtcttcacgccatttgttggagagtctacttgttcttaggataaagaccattttgaatcatctctaccattctgtctacattggca |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7549335 |
aattggtttataacgtcttcacgccatttgttggagagtctacttgttcttaggataaagaccattttgaatcatctctaccattctgtctacattggca |
7549434 |
T |
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| Q |
443 |
gtcatcttggnnnnnnnttgtccattccttattgtcttcattg |
485 |
Q |
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| T |
7549435 |
gtcatcttgggaaaaaattgtccattccttattgtcttcattg |
7549477 |
T |
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