View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20460_low_8 (Length: 496)
Name: NF20460_low_8
Description: NF20460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20460_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 41729277 - 41729742
Alignment:
| Q |
20 |
gggagatggcatgagttagattttagaaactagttttggatgttcattaaatcatatgaactgtgatttgtatttcattttgttcctattttgttattga |
119 |
Q |
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| T |
41729277 |
gggagatgacatgagttagattttagaaactagttttggatgttcattaaatcatatgaactgtgatttgtatttcattttgttcctattttgttattga |
41729376 |
T |
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| Q |
120 |
gattgtatcaaatgtggaagaaaatgcatagattttcaaagttgtaacttctttcattagtcattttctgaacttgtatacaggtggaagaagtaagaaa |
219 |
Q |
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| T |
41729377 |
gattgtatcaaatgtggaagaaaatgcatagatttccaaagttgtaacttctttcattagtcattttctgaacttgtatacaggtggaagaagtaagaaa |
41729476 |
T |
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| Q |
220 |
gcaagcttctattcttcaatcttatcttgaacagagaggggttgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatgg |
319 |
Q |
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| T |
41729477 |
gcaagcttctattcttcaatcttatcttgaacagagaggggctgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatgg |
41729576 |
T |
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| Q |
320 |
tatgttactgaaactcctgtaaatatatgtactttctgtaaatattatcaatttcttaagaagatactctctttcaattcatgatttgcagtacgcagtt |
419 |
Q |
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| T |
41729577 |
tatgttactgaaactcctgtaaatatatgtactttctgtaaatattatcaatttctttagaagatactctctttcgattcatgatttgcagtacgcagtt |
41729676 |
T |
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| Q |
420 |
tgatattttcctaaagacttcaaaattttccagatttggcttcatatattgacatgtaatgttcat |
485 |
Q |
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| T |
41729677 |
tgatattttcctaaagacttcaaaatttgccagatttggcttcatatattgacatgtaatggtcat |
41729742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 406
Target Start/End: Original strand, 1311449 - 1311818
Alignment:
| Q |
35 |
ttagattttagaaactagttttggatgttcattaaatcatatgaactgtgatttgtatttcattttgttcctattttgttattgagattgtatcaaatgt |
134 |
Q |
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|||||||||||||||| | ||||||||| |||||||| |||| | ||||||||||||| ||||||||||||||||||||| ||| ||||| | ||| |
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| T |
1311449 |
ttagattttagaaactgctcttggatgtttgttaaatcaaatgagcggtgatttgtatttaattttgttcctattttgttat-gaggctgtattaggtgt |
1311547 |
T |
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| Q |
135 |
ggaagaaaatgcatagattttcaaagttgtaacttctttcattagtcattttctgaacttgtatacaggtggaagaagtaagaaagcaagcttctattct |
234 |
Q |
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| T |
1311548 |
tgaagaaaatgggttgtttgccaaattagtaacttctttcataattcgttt-ctcaacttgtatacagttggaagaagtaagaaagcaggcttctatcct |
1311646 |
T |
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| Q |
235 |
tcaatcttatcttgaacagagaggggttgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatggtatgttactgaaact |
334 |
Q |
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| T |
1311647 |
cgagtcctatcttgaacaaagaggggttgttctacctaaaggattcctaatctgtaaagttatacttccaaatcctaaattatggtatgttttttaatct |
1311746 |
T |
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| Q |
335 |
cctgtaaatatatgtactttctgtaaatattatcaatttcttaagaagatactctctttcaattcatgattt |
406 |
Q |
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||| ||||| | |||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
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| T |
1311747 |
ccttgaaatacaagtacttgctgtaaatattgtcaatttctttagaagatactctcttttaattcatgattt |
1311818 |
T |
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