View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20461_high_2 (Length: 452)
Name: NF20461_high_2
Description: NF20461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20461_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 31190334 - 31189899
Alignment:
| Q |
1 |
ttattgcacaccaaataactacataagaaaacgaaaatatatttatttatttattcagtttagtttcatccatcaacacataattaatcaattctcttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31190334 |
ttattgcacaccaaataactacataagaaaacgaaaatatatttatttatttattcagtttagtttcatccatcaacacataattaatcaattctcttta |
31190235 |
T |
|
| Q |
101 |
tcaggtggtgtaagtgcagctgtgagcgtattcttaatccacttcattatctatttgtttggatgcaaattatcaatatggcaaggaaaatttcaattta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31190234 |
tcaggtggtgtaagtgcagctgtgagcgtattcttaatctacttcattctctatttttttggatgcaaattatcaatatggcaaggaaaatttcaattta |
31190135 |
T |
|
| Q |
201 |
gaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31190134 |
gaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactc |
31190035 |
T |
|
| Q |
301 |
tttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31190034 |
tttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaa |
31189935 |
T |
|
| Q |
401 |
ggaaacggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189934 |
ggaaacggtgaagaatttattaatgaagtttctagt |
31189899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 145 - 432
Target Start/End: Complemental strand, 31146132 - 31145845
Alignment:
| Q |
145 |
cattatctatttgtttggatgcaaattatcaatatggcaaggaaaatttcaatttagaactaagaatgatacaaatattgaagcatttttaaaagatcat |
244 |
Q |
| |
|
||||||||||| || || ||||||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31146132 |
cattatctattgtcttagaagcaaattattaatacggcaaggaaagcttcagtttagaactaagaatgatacaaatattgaagcatttttaaaagatcat |
31146033 |
T |
|
| Q |
245 |
ggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaaggttaaacttggtcaagggggttttggtgttgtgtaca |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31146032 |
ggagctctattgcagaaaagatataaatattcagaaataaagaaaatgacagactctttcaaggttaaacttggtcaaggtggttttggtgttgtgtaca |
31145933 |
T |
|
| Q |
345 |
aaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaacggtgaagaatttattaatgaagtttc |
432 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31145932 |
aaggaaagttattcaatggttgtcatgtcgctataaagatattgaattcatccaaaggaaacggtgaagaatttattaatgaggtttc |
31145845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 436
Target Start/End: Complemental strand, 31202142 - 31201706
Alignment:
| Q |
7 |
cacaccaaataactacataagaaaacgaaaatata---tttatttat--ttattcagtttagtttcatccatcaacacataattaatcaattctctttat |
101 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| ||| ||||| ||||||||||||||||| || |||| |||||||||||| |||||| || | |
|
|
| T |
31202142 |
cacaccaaataactatataagaaaa-gaaaatataaattttctttatatttattcagtttagtttcttctatcaggacataattaatcgattctcctttt |
31202044 |
T |
|
| Q |
102 |
---caggtggtgtaagtgcagctgtgagcgtattcttaatccacttcattatctatttgtttggatgcaaattatcaatatggcaaggaaaatttcaatt |
198 |
Q |
| |
|
|||||| ||||||||| | | ||| |||||| ||||| | | ||||| || | || || |||||| |||||| | |||||||||||||| | |
|
|
| T |
31202043 |
aaacaggtgttgtaagtgcggttatgaccgtattgttaatgtgcataattatttactgtcttagaagcaaatcatcaattcgacaaggaaaatttcagtg |
31201944 |
T |
|
| Q |
199 |
tagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagac |
298 |
Q |
| |
|
|||||||| |||||| | ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
31201943 |
tagaactaggaatgaaaaaaaaatcgaagcatttttaaaagatcatggagctctgttgcagaaaagatataaatattcagaaataaagaaaatgacaaac |
31201844 |
T |
|
| Q |
299 |
tctttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatcca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||| |||||||||||||||||||||| |
|
|
| T |
31201843 |
tctttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttattcaatggttgccacgctgcgataaagatattgaattcatcca |
31201744 |
T |
|
| Q |
399 |
aaggaaacggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
31201743 |
aaggaaatggtgaagaatttattaatgaggttgctagt |
31201706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 197 - 436
Target Start/End: Complemental strand, 31172393 - 31172154
Alignment:
| Q |
197 |
tttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacag |
296 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
31172393 |
tttagaaccaagaatgataacaatattgaagcatttttaaaagaccatggagctttattgcagaaaagatataaattttctgaaataaagaaaatgacaa |
31172294 |
T |
|
| Q |
297 |
actctttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
31172293 |
actctttcaaggttaaacttggtcaaggaggctttggtgttgtgtacaaaggaaagttattcaatggttgtcacgttgctataaagatattgaatccatc |
31172194 |
T |
|
| Q |
397 |
caaaggaaacggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31172193 |
caaaggaaacggtgaagaatttattaatgaggtttctagt |
31172154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 197 - 436
Target Start/End: Original strand, 31224011 - 31224250
Alignment:
| Q |
197 |
tttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacag |
296 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
31224011 |
tttaggacaaagaatgataaaaacattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaaataaagaacatgacaa |
31224110 |
T |
|
| Q |
297 |
actctttcaaggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatc |
396 |
Q |
| |
|
|||| || |||| ||| || || |||||||||||||||||||||||||||||||||||| | ||||||||| ||| || | |||||||||||| ||| |
|
|
| T |
31224111 |
actcgttaaaggataagctcgggcaagggggttttggtgttgtgtacaaaggaaagttatttaatggttgtcttgtggcagtgaagatattgaatgtatc |
31224210 |
T |
|
| Q |
397 |
caaaggaaacggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||| ||||| |
|
|
| T |
31224211 |
aaaaggaaatggtgaggaatttattaatgaggttgctagt |
31224250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 209 - 436
Target Start/End: Original strand, 30960518 - 30960745
Alignment:
| Q |
209 |
aatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaagg |
308 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||| |||| ||||| |
|
|
| T |
30960518 |
aatgatataaacattgaagcatttctaaaagatcatggagctctactgcaaaaaagatataaattttcagaaataaagaaaatgacaaactcgttcaaaa |
30960617 |
T |
|
| Q |
309 |
ttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaacgg |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||| |||| || | ||||| |||||| |||| ||||||||||| |
|
|
| T |
30960618 |
ttaaacttggtcaagggggatttggtgttgtctacaaaggaaagttattgaatggttgtcatgtggcagtgaagattttgaatgcatcaaaaggaaacgg |
30960717 |
T |
|
| Q |
409 |
tgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
||||||||||||||| || ||| ||||| |
|
|
| T |
30960718 |
tgaagaatttattaacgaggttgctagt |
30960745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 206 - 436
Target Start/End: Original strand, 30944510 - 30944740
Alignment:
| Q |
206 |
aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca |
305 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||| |||| ||||| || ||||||||||||| ||||||| |||||||||||||| |||| |||| |
|
|
| T |
30944510 |
aagaatgatataaacattgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattca |
30944609 |
T |
|
| Q |
306 |
aggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaa |
405 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| || | ||||| |||||| |||| ||||||| |
|
|
| T |
30944610 |
aaattaaacttggtcaagggggttttggtgctgtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagattttgaatgcatcgaaaggaat |
30944709 |
T |
|
| Q |
406 |
cggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| |
|
|
| T |
30944710 |
tggtgaagactttattaatgaggttactagt |
30944740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 206 - 436
Target Start/End: Original strand, 30985833 - 30986063
Alignment:
| Q |
206 |
aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca |
305 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| | ||||||| |||||||||| ||| |||| |||| |
|
|
| T |
30985833 |
aagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttcagaaataaagaaaattacaaactcattca |
30985932 |
T |
|
| Q |
306 |
aggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaa |
405 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||| || | |||||||| ||| |||| |||||||| |
|
|
| T |
30985933 |
aaattaaagttggtcaagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaa |
30986032 |
T |
|
| Q |
406 |
cggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| |
|
|
| T |
30986033 |
tggtgaagactttattaatgaggttgctagt |
30986063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 206 - 436
Target Start/End: Original strand, 30991997 - 30992227
Alignment:
| Q |
206 |
aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca |
305 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| | ||||||| |||||||||| ||| |||| |||| |
|
|
| T |
30991997 |
aagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttcagaaataaagaaaattacaaactcattca |
30992096 |
T |
|
| Q |
306 |
aggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaa |
405 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||| || | |||||||| ||| |||| |||||||| |
|
|
| T |
30992097 |
aaattaaagttggtcaagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaa |
30992196 |
T |
|
| Q |
406 |
cggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| |
|
|
| T |
30992197 |
tggtgaagactttattaatgaggttgctagt |
30992227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 206 - 436
Target Start/End: Original strand, 30954770 - 30955000
Alignment:
| Q |
206 |
aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca |
305 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||| |||||||||| ||| | || |||| |
|
|
| T |
30954770 |
aagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaataaagaaaataacaaattcattca |
30954869 |
T |
|
| Q |
306 |
aggttaaacttggtcaagggggttttggtgttgtgtacaaaggaaagttactcaatggttgtgatgttgctataaagatattgaattcatccaaaggaaa |
405 |
Q |
| |
|
| |||||||||||||||||||||| |||| |||||||||||||||| || | ||||||| ||| || | ||||| | ||| |||| |||||||| |
|
|
| T |
30954870 |
aaattaaacttggtcaagggggtttcggtgctgtgtacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaa |
30954969 |
T |
|
| Q |
406 |
cggtgaagaatttattaatgaagtttctagt |
436 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |
|
|
| T |
30954970 |
tggtgaagaatttattaatgaggttactagt |
30955000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 31131811 - 31131673
Alignment:
| Q |
216 |
caaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaaggttaaact |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||| |||| || |||| |||||||||||||| |
|
|
| T |
31131811 |
caaatattgaagcatttttaaaagatcatagagctctattgcagaaaagatataaattctttgaaataaagagaatg-caaactcattcaaggttaaact |
31131713 |
T |
|
| Q |
316 |
tggtcaagggggttttggtgttgtgtacaaaggaaagtta |
355 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
31131712 |
tggtcaaggaggttttggtgctgtgtgcaaaggaaagtta |
31131673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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