View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20461_low_4 (Length: 270)
Name: NF20461_low_4
Description: NF20461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20461_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 31190377 - 31190604
Alignment:
| Q |
31 |
gacaaataatcataatactctgaaatagttgtactaagaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataat |
130 |
Q |
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| T |
31190377 |
gacaaataatcataatactctgaaatagttgtactaagaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataat |
31190476 |
T |
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| Q |
131 |
cattttaggttaaaaaattgaagatacgtgatttaagattgattatctagtattctttatttatttttgttttaaaatgtctatcagaaactcacacaca |
230 |
Q |
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| T |
31190477 |
cattttaggttaaaaaattgaagatacgtgatttaagattgattatctagtattctttatttatttttgttttaaaatgtctatcagaaactcacacaca |
31190576 |
T |
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| Q |
231 |
ttaagtgtaaagtgcatagtcgtagtat |
258 |
Q |
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| T |
31190577 |
ttaagtgtaaagtgcatagtcgtagtat |
31190604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 31202186 - 31202327
Alignment:
| Q |
57 |
agttgtactaagaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaaa-ttgaagat |
155 |
Q |
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| T |
31202186 |
agttgtacaaagaatcttggttagaat--tcacaaacattaatatcatcaaagacatgctaaaatatgaataatcattttaggttaaaaaatttgaagac |
31202283 |
T |
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| Q |
156 |
acgtgatttaagattgattatctagtattctttatttatttttg |
199 |
Q |
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| T |
31202284 |
gcatgatttaagattgattatctagtattttttatttatttttg |
31202327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 31172667 - 31172803
Alignment:
| Q |
67 |
agaatcttggttagaatatttacaaacattaatgtcatcgaagacatgttaaaatgtaaataatcattttaggttaaaaa-attgaagatacgtgattta |
165 |
Q |
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| T |
31172667 |
agaatctcggttagaat--tcacaaacattaatgttctcaaagacatgctaaaatataaat---cattttaggttaaaaatatggaagacacgtgattta |
31172761 |
T |
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| Q |
166 |
agattgattatctagtattctttatttatttttgttttaaaa |
207 |
Q |
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| T |
31172762 |
agattgattatctagtattatttatttatttttgtttaaaaa |
31172803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 31151236 - 31151384
Alignment:
| Q |
94 |
attaatgtcatcgaagacatgttaaaatgtaaataatcatttt----aggttaaaaaattgaagatacgtgatttaagattgattatctagta------t |
183 |
Q |
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| T |
31151236 |
attaatgtcaccaaagacatgctaaaatataaataatcattttctttatgttaaaaaattgaagactcgtgatttaagattgattatctagtattttttt |
31151335 |
T |
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| Q |
184 |
tctttatttatttttgttttaaaatgtctatca--gaaactcacacaca |
230 |
Q |
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| T |
31151336 |
tatttttttatttttgtttcaaaatgtctataagtgaaactcacacaca |
31151384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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