View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20462_low_3 (Length: 359)
Name: NF20462_low_3
Description: NF20462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20462_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 30255494 - 30255180
Alignment:
| Q |
17 |
tacttcactttctccaaaggtggaatgtcctaggaaggaaaaatagtttttgacttgagctttgagacttgtaattcgacatattattgaaaaattggtt |
116 |
Q |
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| T |
30255494 |
tacttcactttctccaaaggtggaatgtcctaggaaggaaaaatagtttttgacttgagctttgagacttgtaattcgacatattattgaaaaattggtt |
30255395 |
T |
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| Q |
117 |
aagatgacatttaagttagtttttgtataattgagcagacgacaatgatgattgatgattcatatttcagtttaagcacatcttatcatgatggttgtga |
216 |
Q |
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| T |
30255394 |
aagatgacatttaagttagtttttgtataattgagcagatgacca-------tgatgattcatatttcagtttaagcacatcttatcatgatggttgtga |
30255302 |
T |
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| Q |
217 |
ttatagtctaatacgcaagaaaattatccaaatgaacacaaacattattaagtaactacacaaaaggcagtttgatgcattaaaattctcgtatacgcac |
316 |
Q |
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| T |
30255301 |
ttatagtctaatacgcaagaaaattatccaaatgaacacaaacattattaagtaactgcacaaa----------atgcattaaaattctcgcatacgcac |
30255212 |
T |
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| Q |
317 |
gatctatgaagaggtttcattttttatatatt |
348 |
Q |
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| T |
30255211 |
gatctatgaagaggtttcattttttgtatatt |
30255180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 8299028 - 8298950
Alignment:
| Q |
18 |
acttcactttctccaaaggtg--gaatgtcctaggaaggaaaaatagtttttgac-ttgagctttgagacttgtaattc |
93 |
Q |
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| T |
8299028 |
acttccctttctccaaaggtgtggaacgtcctaggaagaaaaaatagttttggactttgagctctgagacttgtaattc |
8298950 |
T |
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