View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20462_low_4 (Length: 208)
Name: NF20462_low_4
Description: NF20462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20462_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 5828903 - 5828730
Alignment:
| Q |
16 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
115 |
Q |
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| T |
5828903 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
5828804 |
T |
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| Q |
116 |
acaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcg |
189 |
Q |
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| T |
5828803 |
acaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcg |
5828730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 5822974 - 5823147
Alignment:
| Q |
16 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
115 |
Q |
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| T |
5822974 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
5823073 |
T |
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| Q |
116 |
acaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcg |
189 |
Q |
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| T |
5823074 |
acaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcg |
5823147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 5832907 - 5833029
Alignment:
| Q |
71 |
ggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctcca |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
5832907 |
ggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctcca |
5833006 |
T |
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| Q |
171 |
ccataacttcagatgttcgacat |
193 |
Q |
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| T |
5833007 |
ctataacttcagatgttctacat |
5833029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 24038492 - 24038610
Alignment:
| Q |
36 |
aacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacaca |
135 |
Q |
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||||||||| |||||||| ||| |||||| | ||||||| || ||||| || ||||| || ||| || | || ||||| |||||||||| |||||| |
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| T |
24038492 |
aacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacaca |
24038591 |
T |
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| Q |
136 |
ttggtctgtctctatgtat |
154 |
Q |
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||| ||||||||||||||| |
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| T |
24038592 |
ttgatctgtctctatgtat |
24038610 |
T |
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