View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20463_high_20 (Length: 348)
Name: NF20463_high_20
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 25561981 - 25561659
Alignment:
| Q |
15 |
gaagaacccgaagtcgaagccaaatccaacccagaagaaaaaccattgctagtgctaccaccactacacgaagaagacgaagaaaaagggtattcaacgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25561981 |
gaagaacccgaagtcgaagccaaatccaacccagaagaaaaaccattgctagtgctaccaccactacacgaagaagacgaagaaaaagggtattcaacgt |
25561882 |
T |
|
| Q |
115 |
tctccaccatacccaaacctctgcttaagatctcagaagctttgtttacatcaccctttgcaacatcataagccataactgcttcttccattgaagacaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25561881 |
tctccaccatacccaaacctctgcttaagatctcagaagctttgtttacatcaccctttgcaacatcataagccataactgcttcttccattgaagacaa |
25561782 |
T |
|
| Q |
215 |
tgaaaaagcttcaaccaatgatgctaaaaccttgttttttgtctcttgttgttggttttcgataaccccttttgaagattctttgttttcttccannnnn |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25561781 |
tgaaaaagcttcaaccaatgatgctaaaaccttgttttttgtctcttgttgttggttttcgataaccccttttgaagattctttgttttcttccattttt |
25561682 |
T |
|
| Q |
315 |
nnnggaggtttttgcttcttctt |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25561681 |
tttggaggtttttgcttcttctt |
25561659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University