View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_high_3 (Length: 696)
Name: NF20463_high_3
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 17 - 687
Target Start/End: Original strand, 36148741 - 36149404
Alignment:
| Q |
17 |
aaatattaaccatcttttttaaggaaggactcacattttacttatttctctacaattaccataaatagcttttgtgtaaatgtttgaacatttctctaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36148741 |
aaatattaaccatcttttttaaggaaggactcacattttacttatttctctacaattaccataaatagcttttgtgtaaatgtttgaacatttctctaat |
36148840 |
T |
|
| Q |
117 |
atttattgtaagaatagtttctgtttcagattgtaagccatgattagattaaaaaatagttttgttaattagcacgttaatatttaagctcttgattaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | | |
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| T |
36148841 |
atttattgtaagaatagtttctgtttcagattgtaagccatgattagattaaaaaatagttttgttaattagcacgttaatatata-----ttta--agc |
36148933 |
T |
|
| Q |
217 |
tcttgaaactaagcaaagttattatagtattaaccatttggtgtgaccaatatgagagagatagaacttacttggtctccaagtagaggttttttgtgtc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36148934 |
tcttgaaactaagcaaagttattatagtattaaccatttggtgtgaccaatatgagagtgatagaacttacttggtctccaagtagaggttttttgtgtc |
36149033 |
T |
|
| Q |
317 |
gcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctggtgctagggt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149034 |
gcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcacgtaaacgggtcaagtgacctggtgctagggt |
36149133 |
T |
|
| Q |
417 |
tggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36149134 |
tggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataa |
36149233 |
T |
|
| Q |
517 |
gtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttctt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149234 |
gtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttctt |
36149333 |
T |
|
| Q |
617 |
ttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttct |
687 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149334 |
ttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttct |
36149404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 272 - 592
Target Start/End: Original strand, 36083092 - 36083412
Alignment:
| Q |
272 |
gagagatagaacttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtc |
371 |
Q |
| |
|
|||||| ||||||||||| ||||||||| || || |||||||| |||| ||||||||| ||||||| ||||| || |||||||| |||||||||||||| |
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| T |
36083092 |
gagagagagaacttacttcgtctccaagcagtggctttttgtgacgcacataacgatgtaaaccatatttgatggctacacgtgcaagtttttcagtgtc |
36083191 |
T |
|
| Q |
372 |
gacatttgcagcacgtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacct |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
36083192 |
gacatttgcagcacgtaaacgggtcaagtgacctggtgccagcgttggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacct |
36083291 |
T |
|
| Q |
472 |
acatattccaaacgttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaa |
571 |
Q |
| |
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| ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| | |
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| T |
36083292 |
atgtattccaaacgctcataagataagccattctcagcaccgtaagtacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattcta |
36083391 |
T |
|
| Q |
572 |
gaatggcttcaacttcatgca |
592 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
36083392 |
gaattgcttccacttcatgca |
36083412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 36173472 - 36173567
Alignment:
| Q |
282 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
377 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||| ||| ||||| |
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| T |
36173472 |
acttacttcctctccaagttgaggttttttgtgacgcaaataacgatccaatccatgtttgatagccacacgtgccagcttttcagagtccacatt |
36173567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 36160161 - 36160257
Alignment:
| Q |
282 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacattt |
378 |
Q |
| |
|
||||||||| ||||||||| | || |||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||| ||||||| ||| |||||| |
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|
| T |
36160161 |
acttacttgctctccaagttgtggctttttgtgacgcaaataacgatccaacccatgattgatagccactcgtgccagcttttcagagtccacattt |
36160257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 36082939 - 36082994
Alignment:
| Q |
182 |
taattagcacgttaatatttaagctcttgattaaatcttgaaactaagcaaagttat |
238 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
36082939 |
taattagaacgttaatattga-gctcttgattaaatcttgaaactaagcaaagttat |
36082994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 36068934 - 36069034
Alignment:
| Q |
144 |
agattgtaagccatgattagattaaaaaata------gttttgttaattagcacgttaatatttaagctcttgattaaatcttgaaactaagcaaagtta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| ||||||| | ||||||||| |||| |||||||| |||||||| |||||||||||| |
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|
| T |
36068934 |
agattgtaagccatgattagattaaaaaaaaaaaattgtcttggtaattagaaggttaatattagagcttttgattaactcttgaaattaagcaaagtta |
36069033 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
|
| |
|
|
| T |
36069034 |
t |
36069034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 639 - 687
Target Start/End: Original strand, 36083456 - 36083504
Alignment:
| Q |
639 |
ttccttcacgtgtgctacttcttgtccttgattaggagagtgttcttct |
687 |
Q |
| |
|
|||||||| |||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
36083456 |
ttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttct |
36083504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 523 - 661
Target Start/End: Complemental strand, 26527763 - 26527625
Alignment:
| Q |
523 |
tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| |
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|
| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct |
26527664 |
T |
|
| Q |
623 |
ctgcatcagtctcatcttccttcacgtgtgctacttctt |
661 |
Q |
| |
|
| |||||| |||||| |||||||| |||| || |||||| |
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|
| T |
26527663 |
ccgcatcattctcattttccttcatgtgttcttcttctt |
26527625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 10489788 - 10489715
Alignment:
| Q |
292 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc |
365 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || ||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
10489788 |
tctccaagttgaggctttttgtgtcgcaaataaccatccaacccatgtttgatagccacacgtgccagtttttc |
10489715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 17453724 - 17453819
Alignment:
| Q |
282 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
377 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||| ||||| |
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|
| T |
17453724 |
acttacttgctctgcaagttgaggttttttgtgtcgcaaataacgacccaacccatgtttgatagccacacgtgcgtgttttttagagtccacatt |
17453819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 17454787 - 17454712
Alignment:
| Q |
292 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcag |
367 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||||| ||| ||||| ||||| || |||| |||||||||||||| |
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| T |
17454787 |
tctccaagttgaggctttttgtgttgcaaataacgatccaacccatgtttgatagctacacatgccagtttttcag |
17454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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